Many ontologies' license labels and URLs don't match

[cthoyt]

As a follow-up to #1635 and with some wisdom from Nico given in related issue #1636, there are several conflicts between the license labels and license URLs. Most of these are due to the lack of specificity of the CC-BY version.

How to fix:

1. Open up your ontology's markdown file in https://github.com/OBOFoundry/OBOFoundry.github.io/tree/master/ontology
2. Press the pencil icon in the top right to edit
3. Fix the license label. E.g., update from CC-BY to CC-BY 3.0 or CC-BY 4.0
4. Scroll to the bottom and press the big green button to propose a pull request

See example PR at #1639, 30 second tutorial video at https://www.youtube.com/watch?v=hGokszEUZtA.

Here's a table of all the ontologies with this issue, plus the actionable contact information on who is responsible for each in case someone is inclined to nudge them:

prefix	license_label	license_url	contact	email	github	tracker
aism	CC-BY	https://creativecommons.org/licenses/by/4.0/	Jennifer C. Girón	entiminae@gmail.com		https://github.com/insect-morphology/aism
amphx	CC-BY	http://creativecommons.org/licenses/by/3.0/	Hector Escriva	hescriva@obs-banyuls.fr		https://github.com/EBISPOT/amphx_ontology
aro	CC-BY	https://creativecommons.org/licenses/by/4.0/	CARD	card@mcmaster.ca	@raphenya	https://github.com/arpcard/aro
bfo	CC-BY	http://creativecommons.org/licenses/by/4.0/	Barry Smith	phismith@buffalo.edu	@phismith	https://github.com/BFO-ontology/BFO
bspo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Chris Mungall	cjmungall@lbl.gov	@cmungall	https://github.com/obophenotype/biological-spatial-ontology
cdno	CC-BY	https://creativecommons.org/licenses/by/3.0/	Liliana Andres Hernandez	l.andres.hernandez.18@student.scu.edu.au	@LilyAndres	https://github.com/Southern-Cross-Plant-Science/cdno
chmo	CC-BY	http://creativecommons.org/licenses/by/4.0/	Colin Batchelor	batchelorc@rsc.org	@batchelorc	https://github.com/rsc-ontologies/rsc-cmo
cido	CC-BY	http://creativecommons.org/licenses/by/4.0/	Yongqun Oliver He	yongqunh@med.umich.edu		https://github.com/cido-ontology/cido
cl	CC-BY	http://creativecommons.org/licenses/by/4.0/	Alexander Diehl	addiehl@buffalo.edu	@addiehl	https://github.com/obophenotype/cell-ontology
clo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Sirarat Sarntivijai	siiraa@umich.edu		https://github.com/CLO-Ontology/CLO
clyh	CC-BY	http://creativecommons.org/licenses/by/3.0/	Lucas Leclere	lucas.leclere@obs-vlfr.fr	@L-Leclere	https://github.com/EBISPOT/clyh_ontology
cro	CC-BY	https://creativecommons.org/licenses/by/2.0/	Marijane White	whimar@ohsu.edu	@marijane	https://github.com/data2health/contributor-role-ontology
cteno	CC-BY	http://creativecommons.org/licenses/by/3.0/	Chris Mungall	cjmungall@lbl.gov	@cmungall	https://github.com/obophenotype/ctenophore-ontology
cto	CC-BY	http://creativecommons.org/licenses/by/4.0/	Dr. Alpha Tom Kodamullil	alpha.tom.kodamullil@scai.fraunhofer.de	@akodamullil	https://github.com/ClinicalTrialOntology/CTO
dpo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Clare Pilgrim	cp390@cam.ac.uk		https://github.com/FlyBase/drosophila-phenotype-ontology
dron	CC-BY	http://creativecommons.org/licenses/by/3.0/	William Hogan	hoganwr@gmail.com		https://github.com/ufbmi/dron/
duo	CC-BY	http://creativecommons.org/licenses/by/4.0/	Melanie Courtot	mcourtot@gmail.com	@mcourtot	https://github.com/EBISPOT/DUO
ecao	CC-BY	http://creativecommons.org/licenses/by/3.0/	Charles Ettensohn	ettensohn@cmu.edu	@ettensohn	https://github.com/echinoderm-ontology/ecao_ontology
ecocore	CC-BY	http://creativecommons.org/licenses/by/3.0/	Pier Luigi Buttigieg	p.buttigieg@gmail.com	@pbuttigieg	https://github.com/EcologicalSemantics/ecocore
envo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Pier Luigi Buttigieg	p.buttigieg@gmail.com	@pbuttigieg	https://github.com/EnvironmentOntology/envo
eupath	CC-BY	http://creativecommons.org/licenses/by/4.0/	Chris Stoeckert	stoeckrt@pennmedicine.upenn.edu	@cstoeckert	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
fbbt	CC-BY	http://creativecommons.org/licenses/by/3.0/	Clare Pilgrim	cp390@cam.ac.uk
fbcv	CC-BY	http://creativecommons.org/licenses/by/3.0/	Clare Pilgrim	cp390@cam.ac.uk		https://github.com/FlyBase/flybase-controlled-vocabulary
fbdv	CC-BY	http://creativecommons.org/licenses/by/3.0/	Clare Pilgrim	cp390@cam.ac.uk
fobi	CC-BY	http://creativecommons.org/licenses/by/3.0/	Pol Castellano Escuder	polcaes@gmail.com	@pcastellanoescuder	https://github.com/pcastellanoescuder/FoodBiomarkerOntology
foodon	CC-BY	http://creativecommons.org/licenses/by/3.0/	Damion Dooley	damion_dooley@sfu.ca	@Public-Health-Bioinformatics	https://github.com/FoodOntology/foodon
fypo	CC-BY	http://creativecommons.org/licenses/by/4.0/	Midori Harris	mah79@cam.ac.uk	@mah11	https://github.com/pombase/fypo
genepio	CC-BY	http://creativecommons.org/licenses/by/3.0/	Damion Dooley	damion_dooley@sfu.ca		https://github.com/GenEpiO/genepio
geno	CC-BY-SA	https://creativecommons.org/licenses/by-sa/2.0/	Matthew Brush	mhb120@gmail.com	@mbrush	https://github.com/monarch-initiative/GENO-ontology
hsapdv	CC-BY	http://creativecommons.org/licenses/by/3.0/	bgee	bgee@sib.swiss		https://github.com/obophenotype/developmental-stage-ontologies
hso	CC-BY	http://creativecommons.org/licenses/by/3.0/	Fernanda Dorea	fernanda.dorea@sva.se	@nandadorea	https://github.com/SVA-SE/HSO
iao	CC-BY	http://creativecommons.org/licenses/by/4.0/	Jie Zheng	jiezheng@pennmedicine.upenn.edu	@zhengj2007	https://github.com/information-artifact-ontology/IAO
iceo	CC-BY	http://creativecommons.org/licenses/by/4.0/	Meng LIU	liumeng94@sjtu.edu.cn		https://github.com/ontoice/ICEO
ico	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqun Oliver He	yongqunh@med.umich.edu	@yongqunh	https://github.com/ICO-ontology/ICO
ino	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqun Oliver He	yongqunh@med.umich.edu		https://github.com/INO-ontology/ino
maxo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Leigh Carmody	Leigh.Carmody@jax.org	@LCCarmody	https://github.com/monarch-initiative/MAxO
mco	CC-BY	http://creativecommons.org/licenses/by/3.0/	Citlalli Mejía-Almonte	citlalli.mejiaalmonte@gmail.com		https://github.com/microbial-conditions-ontology/microbial-conditions-ontology
mf	CC-BY	http://creativecommons.org/licenses/by/3.0/	Janna Hastings	janna.hastings@gmail.com	@jannahastings	https://github.com/jannahastings/mental-functioning-ontology
mfmo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Robert Druzinsky	druzinsk@uic.edu	@RDruzinsky	https://github.com/RDruzinsky/feedontology
mfoem	CC-BY	http://creativecommons.org/licenses/by/3.0/	Janna Hastings	janna.hastings@gmail.com	@jannahastings	https://github.com/jannahastings/emotion-ontology
mfomd	CC-BY	http://creativecommons.org/licenses/by/3.0/	Janna Hastings	janna.hastings@gmail.com		https://github.com/jannahastings/mental-functioning-ontology
mmusdv	CC-BY	http://creativecommons.org/licenses/by/3.0/	bgee	bgee@sib.swiss		https://github.com/obophenotype/developmental-stage-ontologies
mpath	CC-BY	http://creativecommons.org/licenses/by/3.0/	Paul Schofield	pns12@hermes.cam.ac.uk		https://github.com/PaulNSchofield/mpath
mpio	CC-BY	http://creativecommons.org/licenses/by/4.0/	Mathias Brochhausen	mbrochhausen@uams.edu	@mbrochhausen	https://github.com/MPIO-Developers/MPIO
mro	CC-BY	https://creativecommons.org/licenses/by/3.0/	Bjoern Peters	bpeters@lji.org	@bpeters42	https://github.com/IEDB/MRO
ms	CC-BY	https://creativecommons.org/licenses/by/3.0/	Gerhard Mayer	gerhard.mayer@rub.de		https://github.com/HUPO-PSI/psi-ms-CV
nbo	CC-BY	http://creativecommons.org/licenses/by/3.0/	George Gkoutos	g.gkoutos@bham.ac.uk	@gkoutos	https://github.com/obo-behavior/behavior-ontology
oae	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqunh He	yongqunh@med.umich.edu		https://github.com/OAE-ontology/OAE
obcs	CC-BY	http://creativecommons.org/licenses/by/3.0/	Jie Zheng	jiezheng@pennmedicine.upenn.edu		https://github.com/obcs/obcs
obib	CC-BY	http://creativecommons.org/licenses/by/4.0/	Jie Zheng	jiezheng@pennmedicine.upenn.edu		https://github.com/biobanking/biobanking
ogg	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqun Oliver He	yongqunh@med.umich.edu
ogms	CC-BY	http://creativecommons.org/licenses/by/4.0/	Brian Aevermann	baeverma@jcvi.org		https://github.com/OGMS/ogms
ohd	CC-BY	http://creativecommons.org/licenses/by/4.0/	Alan Ruttenberg	alanruttenberg@gmail.com
ohmi	CC-BY	http://creativecommons.org/licenses/by/4.0/	Yongqun Oliver He	yongqunh@med.umich.edu		https://github.com/ohmi-ontology/ohmi
ohpi	CC-BY	http://creativecommons.org/licenses/by/4.0/	Edison Ong	edong@umich.edu		https://github.com/OHPI/ohpi
olatdv	CC-BY	http://creativecommons.org/licenses/by/3.0/	bgee	bgee@sib.swiss		https://github.com/obophenotype/developmental-stage-ontologies
omp	CC-BY	http://creativecommons.org/licenses/by/3.0/	James C. Hu	jimhu@tamu.edu		https://github.com/microbialphenotypes/OMP-ontology
one	CC-BY	https://creativecommons.org/licenses/by/4.0/	Chen Yang	chen.yang@ugent.be	@cyang0128	https://github.com/cyang0128/Nutritional-epidemiologic-ontologies
ons	CC-BY	https://creativecommons.org/licenses/by/4.0/	Francesco Vitali	francesco.vitali@ibba.cnr.it	@FrancescoVit	https://github.com/enpadasi/Ontology-for-Nutritional-Studies
ontoneo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Fernanda Farinelli	fernanda.farinelli@gmail.com		https://github.com/ontoneo-project/Ontoneo
oostt	CC-BY	http://creativecommons.org/licenses/by/4.0/	Mathias Brochhausen	mbrochhausen@gmail.com		https://github.com/OOSTT/OOSTT
opmi	CC-BY	http://creativecommons.org/licenses/by/4.0/	Yongqun Oliver He	yongqunh@med.umich.edu		https://github.com/OPMI/opmi
ornaseq	CC-BY	http://creativecommons.org/licenses/by/4.0/	Stephen Fisher	safisher@upenn.edu		https://github.com/safisher/ornaseq
ovae	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqunh He	yongqunh@med.umich.edu		https://github.com/OVAE-Ontology/ovae
pato	CC-BY	http://creativecommons.org/licenses/by/3.0/	George Gkoutos	g.gkoutos@gmail.com	@gkoutos	https://github.com/pato-ontology/pato/
pdumdv	CC-BY	http://creativecommons.org/licenses/by/3.0/	bgee	bgee@sib.swiss		https://github.com/obophenotype/developmental-stage-ontologies
phipo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Alayne Cuzick	alayne.cuzick@rothamsted.ac.uk		https://github.com/PHI-base/phipo
plana	CC-BY	http://creativecommons.org/licenses/by/3.0/	Sofia Robb	smr@stowers.org		https://github.com/obophenotype/planaria-ontology
planp	CC-BY	http://creativecommons.org/licenses/by/3.0/	Sofia Robb	smr@stowers.org		https://github.com/obophenotype/planarian-phenotype-ontology
poro	CC-BY	http://creativecommons.org/licenses/by/3.0/	Bob Thacker	robert.thacker@stonybrook.edu		https://github.com/obophenotype/porifera-ontology
ppo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Ramona Walls	rlwalls2008@gmail.com		https://github.com/PlantPhenoOntology/PPO
pr	CC-BY	http://creativecommons.org/licenses/by/4.0/	Darren Natale	dan5@georgetown.edu	@nataled	https://github.com/PROconsortium/PRoteinOntology
psdo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Zach Landis-Lewis	zachll@umich.edu		https://github.com/Display-Lab/psdo
pso	CC-BY	http://creativecommons.org/licenses/by/3.0/	Laurel Cooper	cooperl@science.oregonstate.edu		https://github.com/Planteome/plant-stress-ontology
pw	CC-BY	https://creativecommons.org/licenses/by/4.0/	G. Thomas Hayman	gthayman@mcw.edu		https://github.com/rat-genome-database/PW-Pathway-Ontology
rbo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Daniel C. Berrios	daniel.c.berrios@nasa.gov	@DanBerrios	https://github.com/Radiobiology-Informatics-Consortium/RBO
sepio	CC-BY	https://creativecommons.org/licenses/by/3.0/	Matthew Brush	mhb120@gmail.com		https://github.com/monarch-initiative/SEPIO-ontology
stato	CC-BY	http://creativecommons.org/licenses/by/3.0/	Alejandra Gonzalez-Beltran	alejandra.gonzalez.beltran@gmail.com		https://github.com/ISA-tools/stato
uberon	CC-BY	http://creativecommons.org/licenses/by/3.0/	Chris Mungall	cjmungall@lbl.gov		https://github.com/obophenotype/uberon
uo	CC-BY	http://creativecommons.org/licenses/by/3.0/	George Gkoutos	g.gkoutos@gmail.com		https://github.com/bio-ontology-research-group/unit-ontology
vo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yongqunh He	yongqunh@med.umich.edu		https://github.com/vaccineontology/VO
xao	CC-BY	http://creativecommons.org/licenses/by/3.0/	Erik Segerdell	esegerd3@gmail.com	@seger	https://github.com/xenopus-anatomy/xao
xlmod	CC-BY	https://creativecommons.org/licenses/by/3.0/	Gerhard Mayer	gerhard.mayer@rub.de		https://github.com/HUPO-PSI/mzIdentML
xpo	CC-BY	http://creativecommons.org/licenses/by/3.0/	Erik Segerdell	esegerd3@gmail.com	@seger	https://github.com/obophenotype/xenopus-phenotype-ontology
zeco	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yvonne Bradford	ybradford@zfin.org		https://github.com/ybradford/zebrafish-experimental-conditions-ontology
zfa	CC-BY	http://creativecommons.org/licenses/by/3.0/	Ceri Van Slyke	van_slyke@zfin.org	@cerivs	https://github.com/cerivs/zebrafish-anatomical-ontology
zp	CC-BY	http://creativecommons.org/licenses/by/3.0/	Yvonne Bradford	ybradford@zfin.org		https://github.com/obophenotype/zebrafish-phenotype-ontology

This table was generated with the following Python code:

from tabulate import tabulate

from bioregistry.external.obofoundry import get_obofoundry
from bioregistry.license_standardizer import standardize_license


def main():
    rows = []
    for key, entry in sorted(get_obofoundry(force_download=True).items()):
        if entry["deprecated"] or entry["inactive"]:
            continue
        license_label = entry.get("license")
        license_url = entry.get("license.url")
        if license_label is None and license_url is None:
            continue
        # if license_label is None or license_url is None:
        #     raise ValueError
        if standardize_license(license_url) != standardize_license(license_label):
            contact_email = entry.get("contact", "")
            contact_name = entry.get("contact.label", "")
            contact_github = entry.get("contact.github", "")
            repository = entry.get("repository", "")
            rows.append(
                (
                    f"[{key}](http://www.obofoundry.org/ontology/{key})",
                    license_label,
                    license_url,
                    contact_name,
                    contact_email,
                    contact_github and f"@{contact_github}",
                    repository,
                )
            )

    print(
        tabulate(
            rows,
            headers=[
                "prefix",
                "license_label",
                "license_url",
                "contact",
                "email",
                "github",
                "tracker",
            ],
            tablefmt="github",
        )
    )


if __name__ == "__main__":
    main()

[mbrochhausen]

I am grateful for this bug report and I will follow up with it ASAP. However, from a motivational and psychological perspective not using the word "offenders" might prove helpful. Just my 2 cents... Best, Mathias

…

On Wed, Nov 3, 2021 at 11:03 AM Charles Tapley Hoyt < ***@***.***> wrote: As a follow-up to #1635 <#1635> and with some wisdom from Nico given in related issue #1636 <#1636>, there are several conflicts between the license labels and license URLs. Most of these are due to the lack of specificity of the CC-BY version. Here's a table of all offenders, plus the actionable contact information on who is responsible for the ontology in case someone is inclined to nudge them: prefix license_label license_url contact email github tracker aism <http://www.obofoundry.org/ontology/aism> CC-BY https://creativecommons.org/licenses/by/4.0/ Jennifer C. Girón ***@***.*** https://github.com/insect-morphology/aism amphx <http://www.obofoundry.org/ontology/amphx> CC-BY http://creativecommons.org/licenses/by/3.0/ Hector Escriva ***@***.*** https://github.com/EBISPOT/amphx_ontology aro <http://www.obofoundry.org/ontology/aro> CC-BY https://creativecommons.org/licenses/by/4.0/ CARD ***@***.*** @raphenya <https://github.com/raphenya> https://github.com/arpcard/aro bfo <http://www.obofoundry.org/ontology/bfo> CC-BY http://creativecommons.org/licenses/by/4.0/ Barry Smith ***@***.*** @phismith <https://github.com/phismith> https://github.com/BFO-ontology/BFO bspo <http://www.obofoundry.org/ontology/bspo> CC-BY http://creativecommons.org/licenses/by/3.0/ Chris Mungall ***@***.*** @cmungall <https://github.com/cmungall> https://github.com/obophenotype/biological-spatial-ontology cdno <http://www.obofoundry.org/ontology/cdno> CC-BY https://creativecommons.org/licenses/by/3.0/ Liliana Andres Hernandez ***@***.*** @LilyAndres <https://github.com/LilyAndres> https://github.com/Southern-Cross-Plant-Science/cdno chmo <http://www.obofoundry.org/ontology/chmo> CC-BY http://creativecommons.org/licenses/by/4.0/ Colin Batchelor ***@***.*** @batchelorc <https://github.com/batchelorc> https://github.com/rsc-ontologies/rsc-cmo cido <http://www.obofoundry.org/ontology/cido> CC-BY http://creativecommons.org/licenses/by/4.0/ Yongqun Oliver He ***@***.*** https://github.com/cido-ontology/cido cl <http://www.obofoundry.org/ontology/cl> CC-BY http://creativecommons.org/licenses/by/4.0/ Alexander Diehl ***@***.*** @addiehl <https://github.com/addiehl> https://github.com/obophenotype/cell-ontology clo <http://www.obofoundry.org/ontology/clo> CC-BY http://creativecommons.org/licenses/by/3.0/ Sirarat Sarntivijai ***@***.*** https://github.com/CLO-Ontology/CLO clyh <http://www.obofoundry.org/ontology/clyh> CC-BY http://creativecommons.org/licenses/by/3.0/ Lucas Leclere ***@***.*** @L-Leclere <https://github.com/L-Leclere> https://github.com/EBISPOT/clyh_ontology cro <http://www.obofoundry.org/ontology/cro> CC-BY https://creativecommons.org/licenses/by/2.0/ Marijane White ***@***.*** @marijane <https://github.com/marijane> https://github.com/data2health/contributor-role-ontology cteno <http://www.obofoundry.org/ontology/cteno> CC-BY http://creativecommons.org/licenses/by/3.0/ Chris Mungall ***@***.*** @cmungall <https://github.com/cmungall> https://github.com/obophenotype/ctenophore-ontology cto <http://www.obofoundry.org/ontology/cto> CC-BY http://creativecommons.org/licenses/by/4.0/ Dr. Alpha Tom Kodamullil ***@***.*** @akodamullil <https://github.com/akodamullil> https://github.com/ClinicalTrialOntology/CTO dpo <http://www.obofoundry.org/ontology/dpo> CC-BY http://creativecommons.org/licenses/by/3.0/ Clare Pilgrim ***@***.*** https://github.com/FlyBase/drosophila-phenotype-ontology dron <http://www.obofoundry.org/ontology/dron> CC-BY http://creativecommons.org/licenses/by/3.0/ William Hogan ***@***.*** https://github.com/ufbmi/dron/ duo <http://www.obofoundry.org/ontology/duo> CC-BY http://creativecommons.org/licenses/by/4.0/ Melanie Courtot ***@***.*** @mcourtot <https://github.com/mcourtot> https://github.com/EBISPOT/DUO ecao <http://www.obofoundry.org/ontology/ecao> CC-BY http://creativecommons.org/licenses/by/3.0/ Charles Ettensohn ***@***.*** @ettensohn <https://github.com/ettensohn> https://github.com/echinoderm-ontology/ecao_ontology ecocore <http://www.obofoundry.org/ontology/ecocore> CC-BY http://creativecommons.org/licenses/by/3.0/ Pier Luigi Buttigieg ***@***.*** @pbuttigieg <https://github.com/pbuttigieg> https://github.com/EcologicalSemantics/ecocore envo <http://www.obofoundry.org/ontology/envo> CC-BY http://creativecommons.org/licenses/by/3.0/ Pier Luigi Buttigieg ***@***.*** @pbuttigieg <https://github.com/pbuttigieg> https://github.com/EnvironmentOntology/envo eupath <http://www.obofoundry.org/ontology/eupath> CC-BY http://creativecommons.org/licenses/by/4.0/ Chris Stoeckert ***@***.*** @cstoeckert <https://github.com/cstoeckert> https://github.com/VEuPathDB-ontology/VEuPathDB-ontology fbbt <http://www.obofoundry.org/ontology/fbbt> CC-BY http://creativecommons.org/licenses/by/3.0/ Clare Pilgrim ***@***.*** fbcv <http://www.obofoundry.org/ontology/fbcv> CC-BY http://creativecommons.org/licenses/by/3.0/ Clare Pilgrim ***@***.*** https://github.com/FlyBase/flybase-controlled-vocabulary fbdv <http://www.obofoundry.org/ontology/fbdv> CC-BY http://creativecommons.org/licenses/by/3.0/ Clare Pilgrim ***@***.*** fobi <http://www.obofoundry.org/ontology/fobi> CC-BY http://creativecommons.org/licenses/by/3.0/ Pol Castellano Escuder ***@***.*** @pcastellanoescuder <https://github.com/pcastellanoescuder> https://github.com/pcastellanoescuder/FoodBiomarkerOntology foodon <http://www.obofoundry.org/ontology/foodon> CC-BY http://creativecommons.org/licenses/by/3.0/ Damion Dooley ***@***.*** @Public-Health-Bioinformatics <https://github.com/Public-Health-Bioinformatics> https://github.com/FoodOntology/foodon fypo <http://www.obofoundry.org/ontology/fypo> CC-BY http://creativecommons.org/licenses/by/4.0/ Midori Harris ***@***.*** @mah11 <https://github.com/mah11> https://github.com/pombase/fypo genepio <http://www.obofoundry.org/ontology/genepio> CC-BY http://creativecommons.org/licenses/by/3.0/ Damion Dooley ***@***.*** https://github.com/GenEpiO/genepio geno <http://www.obofoundry.org/ontology/geno> CC-BY-SA https://creativecommons.org/licenses/by-sa/2.0/ Matthew Brush ***@***.*** @mbrush <https://github.com/mbrush> https://github.com/monarch-initiative/GENO-ontology hsapdv <http://www.obofoundry.org/ontology/hsapdv> CC-BY http://creativecommons.org/licenses/by/3.0/ bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies hso <http://www.obofoundry.org/ontology/hso> CC-BY http://creativecommons.org/licenses/by/3.0/ Fernanda Dorea ***@***.*** @nandadorea <https://github.com/nandadorea> https://github.com/SVA-SE/HSO iao <http://www.obofoundry.org/ontology/iao> CC-BY http://creativecommons.org/licenses/by/4.0/ Jie Zheng ***@***.*** @zhengj2007 <https://github.com/zhengj2007> https://github.com/information-artifact-ontology/IAO iceo <http://www.obofoundry.org/ontology/iceo> CC-BY http://creativecommons.org/licenses/by/4.0/ Meng LIU ***@***.*** https://github.com/ontoice/ICEO ico <http://www.obofoundry.org/ontology/ico> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqun Oliver He ***@***.*** @yongqunh <https://github.com/yongqunh> https://github.com/ICO-ontology/ICO ino <http://www.obofoundry.org/ontology/ino> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqun Oliver He ***@***.*** https://github.com/INO-ontology/ino maxo <http://www.obofoundry.org/ontology/maxo> CC-BY http://creativecommons.org/licenses/by/3.0/ Leigh Carmody ***@***.*** @LCCarmody <https://github.com/LCCarmody> https://github.com/monarch-initiative/MAxO mco <http://www.obofoundry.org/ontology/mco> CC-BY http://creativecommons.org/licenses/by/3.0/ Citlalli Mejía-Almonte ***@***.*** https://github.com/microbial-conditions-ontology/microbial-conditions-ontology mf <http://www.obofoundry.org/ontology/mf> CC-BY http://creativecommons.org/licenses/by/3.0/ Janna Hastings ***@***.*** @jannahastings <https://github.com/jannahastings> https://github.com/jannahastings/mental-functioning-ontology mfmo <http://www.obofoundry.org/ontology/mfmo> CC-BY http://creativecommons.org/licenses/by/3.0/ Robert Druzinsky ***@***.*** @RDruzinsky <https://github.com/RDruzinsky> https://github.com/RDruzinsky/feedontology mfoem <http://www.obofoundry.org/ontology/mfoem> CC-BY http://creativecommons.org/licenses/by/3.0/ Janna Hastings ***@***.*** @jannahastings <https://github.com/jannahastings> https://github.com/jannahastings/emotion-ontology mfomd <http://www.obofoundry.org/ontology/mfomd> CC-BY http://creativecommons.org/licenses/by/3.0/ Janna Hastings ***@***.*** https://github.com/jannahastings/mental-functioning-ontology mmusdv <http://www.obofoundry.org/ontology/mmusdv> CC-BY http://creativecommons.org/licenses/by/3.0/ bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies mpath <http://www.obofoundry.org/ontology/mpath> CC-BY http://creativecommons.org/licenses/by/3.0/ Paul Schofield ***@***.*** https://github.com/PaulNSchofield/mpath mpio <http://www.obofoundry.org/ontology/mpio> CC-BY http://creativecommons.org/licenses/by/4.0/ Mathias Brochhausen ***@***.*** @mbrochhausen <https://github.com/mbrochhausen> https://github.com/MPIO-Developers/MPIO mro <http://www.obofoundry.org/ontology/mro> CC-BY https://creativecommons.org/licenses/by/3.0/ Bjoern Peters ***@***.*** @bpeters42 <https://github.com/bpeters42> https://github.com/IEDB/MRO ms <http://www.obofoundry.org/ontology/ms> CC-BY https://creativecommons.org/licenses/by/3.0/ Gerhard Mayer ***@***.*** https://github.com/HUPO-PSI/psi-ms-CV nbo <http://www.obofoundry.org/ontology/nbo> CC-BY http://creativecommons.org/licenses/by/3.0/ George Gkoutos ***@***.*** @gkoutos <https://github.com/gkoutos> https://github.com/obo-behavior/behavior-ontology oae <http://www.obofoundry.org/ontology/oae> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqunh He ***@***.*** https://github.com/OAE-ontology/OAE obcs <http://www.obofoundry.org/ontology/obcs> CC-BY http://creativecommons.org/licenses/by/3.0/ Jie Zheng ***@***.*** https://github.com/obcs/obcs obib <http://www.obofoundry.org/ontology/obib> CC-BY http://creativecommons.org/licenses/by/4.0/ Jie Zheng ***@***.*** https://github.com/biobanking/biobanking ogg <http://www.obofoundry.org/ontology/ogg> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqun Oliver He ***@***.*** ogms <http://www.obofoundry.org/ontology/ogms> CC-BY http://creativecommons.org/licenses/by/4.0/ Brian Aevermann ***@***.*** https://github.com/OGMS/ogms ohd <http://www.obofoundry.org/ontology/ohd> CC-BY http://creativecommons.org/licenses/by/4.0/ Alan Ruttenberg ***@***.*** ohmi <http://www.obofoundry.org/ontology/ohmi> CC-BY http://creativecommons.org/licenses/by/4.0/ Yongqun Oliver He ***@***.*** https://github.com/ohmi-ontology/ohmi ohpi <http://www.obofoundry.org/ontology/ohpi> CC-BY http://creativecommons.org/licenses/by/4.0/ Edison Ong ***@***.*** https://github.com/OHPI/ohpi olatdv <http://www.obofoundry.org/ontology/olatdv> CC-BY http://creativecommons.org/licenses/by/3.0/ bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies omp <http://www.obofoundry.org/ontology/omp> CC-BY http://creativecommons.org/licenses/by/3.0/ James C. Hu ***@***.*** https://github.com/microbialphenotypes/OMP-ontology one <http://www.obofoundry.org/ontology/one> CC-BY https://creativecommons.org/licenses/by/4.0/ Chen Yang ***@***.*** @cyang0128 <https://github.com/cyang0128> https://github.com/cyang0128/Nutritional-epidemiologic-ontologies ons <http://www.obofoundry.org/ontology/ons> CC-BY https://creativecommons.org/licenses/by/4.0/ Francesco Vitali ***@***.*** @FrancescoVit <https://github.com/FrancescoVit> https://github.com/enpadasi/Ontology-for-Nutritional-Studies ontoneo <http://www.obofoundry.org/ontology/ontoneo> CC-BY http://creativecommons.org/licenses/by/3.0/ Fernanda Farinelli ***@***.*** https://github.com/ontoneo-project/Ontoneo oostt <http://www.obofoundry.org/ontology/oostt> CC-BY http://creativecommons.org/licenses/by/4.0/ Mathias Brochhausen ***@***.*** https://github.com/OOSTT/OOSTT opmi <http://www.obofoundry.org/ontology/opmi> CC-BY http://creativecommons.org/licenses/by/4.0/ Yongqun Oliver He ***@***.*** https://github.com/OPMI/opmi ornaseq <http://www.obofoundry.org/ontology/ornaseq> CC-BY http://creativecommons.org/licenses/by/4.0/ Stephen Fisher ***@***.*** https://github.com/safisher/ornaseq ovae <http://www.obofoundry.org/ontology/ovae> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqunh He ***@***.*** https://github.com/OVAE-Ontology/ovae pato <http://www.obofoundry.org/ontology/pato> CC-BY http://creativecommons.org/licenses/by/3.0/ George Gkoutos ***@***.*** @gkoutos <https://github.com/gkoutos> https://github.com/pato-ontology/pato/ pdumdv <http://www.obofoundry.org/ontology/pdumdv> CC-BY http://creativecommons.org/licenses/by/3.0/ bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies phipo <http://www.obofoundry.org/ontology/phipo> CC-BY http://creativecommons.org/licenses/by/3.0/ Alayne Cuzick ***@***.*** https://github.com/PHI-base/phipo plana <http://www.obofoundry.org/ontology/plana> CC-BY http://creativecommons.org/licenses/by/3.0/ Sofia Robb ***@***.*** https://github.com/obophenotype/planaria-ontology planp <http://www.obofoundry.org/ontology/planp> CC-BY http://creativecommons.org/licenses/by/3.0/ Sofia Robb ***@***.*** https://github.com/obophenotype/planarian-phenotype-ontology poro <http://www.obofoundry.org/ontology/poro> CC-BY http://creativecommons.org/licenses/by/3.0/ Bob Thacker ***@***.*** https://github.com/obophenotype/porifera-ontology ppo <http://www.obofoundry.org/ontology/ppo> CC-BY http://creativecommons.org/licenses/by/3.0/ Ramona Walls ***@***.*** https://github.com/PlantPhenoOntology/PPO pr <http://www.obofoundry.org/ontology/pr> CC-BY http://creativecommons.org/licenses/by/4.0/ Darren Natale ***@***.*** @nataled <https://github.com/nataled> https://github.com/PROconsortium/PRoteinOntology psdo <http://www.obofoundry.org/ontology/psdo> CC-BY http://creativecommons.org/licenses/by/3.0/ Zach Landis-Lewis ***@***.*** https://github.com/Display-Lab/psdo pso <http://www.obofoundry.org/ontology/pso> CC-BY http://creativecommons.org/licenses/by/3.0/ Laurel Cooper ***@***.*** https://github.com/Planteome/plant-stress-ontology pw <http://www.obofoundry.org/ontology/pw> CC-BY https://creativecommons.org/licenses/by/4.0/ G. Thomas Hayman ***@***.*** https://github.com/rat-genome-database/PW-Pathway-Ontology rbo <http://www.obofoundry.org/ontology/rbo> CC-BY http://creativecommons.org/licenses/by/3.0/ Daniel C. Berrios ***@***.*** @DanBerrios <https://github.com/DanBerrios> https://github.com/Radiobiology-Informatics-Consortium/RBO sepio <http://www.obofoundry.org/ontology/sepio> CC-BY https://creativecommons.org/licenses/by/3.0/ Matthew Brush ***@***.*** https://github.com/monarch-initiative/SEPIO-ontology stato <http://www.obofoundry.org/ontology/stato> CC-BY http://creativecommons.org/licenses/by/3.0/ Alejandra Gonzalez-Beltran ***@***.*** https://github.com/ISA-tools/stato uberon <http://www.obofoundry.org/ontology/uberon> CC-BY http://creativecommons.org/licenses/by/3.0/ Chris Mungall ***@***.*** https://github.com/obophenotype/uberon uo <http://www.obofoundry.org/ontology/uo> CC-BY http://creativecommons.org/licenses/by/3.0/ George Gkoutos ***@***.*** https://github.com/bio-ontology-research-group/unit-ontology vo <http://www.obofoundry.org/ontology/vo> CC-BY http://creativecommons.org/licenses/by/3.0/ Yongqunh He ***@***.*** https://github.com/vaccineontology/VO xao <http://www.obofoundry.org/ontology/xao> CC-BY http://creativecommons.org/licenses/by/3.0/ Erik Segerdell ***@***.*** @seger <https://github.com/seger> https://github.com/xenopus-anatomy/xao xlmod <http://www.obofoundry.org/ontology/xlmod> CC-BY https://creativecommons.org/licenses/by/3.0/ Gerhard Mayer ***@***.*** https://github.com/HUPO-PSI/mzIdentML xpo <http://www.obofoundry.org/ontology/xpo> CC-BY http://creativecommons.org/licenses/by/3.0/ Erik Segerdell ***@***.*** @seger <https://github.com/seger> https://github.com/obophenotype/xenopus-phenotype-ontology zeco <http://www.obofoundry.org/ontology/zeco> CC-BY http://creativecommons.org/licenses/by/3.0/ Yvonne Bradford ***@***.*** https://github.com/ybradford/zebrafish-experimental-conditions-ontology zfa <http://www.obofoundry.org/ontology/zfa> CC-BY http://creativecommons.org/licenses/by/3.0/ Ceri Van Slyke ***@***.*** @cerivs <https://github.com/cerivs> https://github.com/cerivs/zebrafish-anatomical-ontology zp <http://www.obofoundry.org/ontology/zp> CC-BY http://creativecommons.org/licenses/by/3.0/ Yvonne Bradford ***@***.*** https://github.com/obophenotype/zebrafish-phenotype-ontology This table was generated with the following Python code: from tabulate import tabulate from bioregistry.external.obofoundry import get_obofoundry from bioregistry.license_standardizer import standardize_license def main(): rows = [] for key, entry in sorted(get_obofoundry(force_download=True).items()): if entry["deprecated"] or entry["inactive"]: continue license_label = entry.get("license") license_url = entry.get("license.url") if license_label is None and license_url is None: continue # if license_label is None or license_url is None: # raise ValueError if standardize_license(license_url) != standardize_license(license_label): contact_email = entry.get("contact", "") contact_name = entry.get("contact.label", "") contact_github = entry.get("contact.github", "") repository = entry.get("repository", "") rows.append( ( f"[{key}](http://www.obofoundry.org/ontology/{key})", license_label, license_url, contact_name, contact_email, contact_github and f"@{contact_github}", repository, ) ) print( tabulate( rows, headers=[ "prefix", "license_label", "license_url", "contact", "email", "github", "tracker", ], tablefmt="github", ) ) if __name__ == "__main__": main() — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#1638>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACF6DLXYBS64CMONL5Y3JFTUKFMNLANCNFSM5HJJSOJQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[batchelorc]

Hello, A quick note on how to fix this would be welcome! All the best, Colin. From: Mathias Brochhausen ***@***.***> Sent: 03 November 2021 16:15 To: OBOFoundry/OBOFoundry.github.io ***@***.***> Cc: Colin Batchelor ***@***.***>; Mention ***@***.***> Subject: Re: [OBOFoundry/OBOFoundry.github.io] Many ontologies' license labels and URLs don't match (Issue #1638) I am grateful for this bug report and I will follow up with it ASAP. However, from a motivational and psychological perspective not using the word "offenders" might prove helpful. Just my 2 cents... Best, Mathias

On Wed, Nov 3, 2021 at 11:03 AM Charles Tapley Hoyt < ***@***.***> wrote: As a follow-up to #1635 <#1635<https://github.com/OBOFoundry/OBOFoundry.github.io/pull/1635>> and with some wisdom from Nico given in related issue #1636 <#1636<https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1636>>, there are several conflicts between the license labels and license URLs. Most of these are due to the lack of specificity of the CC-BY version. Here's a table of all offenders, plus the actionable contact information on who is responsible for the ontology in case someone is inclined to nudge them: prefix license_label license_url contact email github tracker aism <http://www.obofoundry.org/ontology/aism<http://www.obofoundry.org/ontology/aism>> CC-BY https://creativecommons.org/licenses/by/4.0/<https://creativecommons.org/licenses/by/4.0> Jennifer C. Girón ***@***.*** https://github.com/insect-morphology/aism<https://github.com/insect-morphology/aism> amphx <http://www.obofoundry.org/ontology/amphx<http://www.obofoundry.org/ontology/amphx>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0> Hector Escriva ***@***.*** https://github.com/EBISPOT/amphx_ontology<https://github.com/EBISPOT/amphx_ontology> aro <http://www.obofoundry.org/ontology/aro<http://www.obofoundry.org/ontology/aro>> CC-BY https://creativecommons.org/licenses/by/4.0/<https://creativecommons.org/licenses/by/4.0/> CARD ***@***.*** @raphenya <https://github.com/raphenya<https://github.com/raphenya>> https://github.com/arpcard/aro<https://github.com/arpcard/aro> bfo <http://www.obofoundry.org/ontology/bfo<http://www.obofoundry.org/ontology/bfo>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0> Barry Smith ***@***.*** @phismith <https://github.com/phismith<https://github.com/phismith>> https://github.com/BFO-ontology/BFO<https://github.com/BFO-ontology/BFO> bspo <http://www.obofoundry.org/ontology/bspo<http://www.obofoundry.org/ontology/bspo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Chris Mungall ***@***.*** @cmungall <https://github.com/cmungall<https://github.com/cmungall>> https://github.com/obophenotype/biological-spatial-ontology<https://github.com/obophenotype/biological-spatial-ontology> cdno <http://www.obofoundry.org/ontology/cdno<http://www.obofoundry.org/ontology/cdno>> CC-BY https://creativecommons.org/licenses/by/3.0/<https://creativecommons.org/licenses/by/3.0> Liliana Andres Hernandez ***@***.*** @LilyAndres <https://github.com/LilyAndres<https://github.com/LilyAndres>> https://github.com/Southern-Cross-Plant-Science/cdno<https://github.com/Southern-Cross-Plant-Science/cdno> chmo <http://www.obofoundry.org/ontology/chmo<http://www.obofoundry.org/ontology/chmo>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Colin Batchelor ***@***.*** @batchelorc <https://github.com/batchelorc<https://github.com/batchelorc>> https://github.com/rsc-ontologies/rsc-cmo<https://github.com/rsc-ontologies/rsc-cmo> cido <http://www.obofoundry.org/ontology/cido<http://www.obofoundry.org/ontology/cido>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Yongqun Oliver He ***@***.*** https://github.com/cido-ontology/cido<https://github.com/cido-ontology/cido> cl <http://www.obofoundry.org/ontology/cl<http://www.obofoundry.org/ontology/cl>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Alexander Diehl ***@***.*** @addiehl <https://github.com/addiehl<https://github.com/addiehl>> https://github.com/obophenotype/cell-ontology<https://github.com/obophenotype/cell-ontology> clo <http://www.obofoundry.org/ontology/clo<http://www.obofoundry.org/ontology/clo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Sirarat Sarntivijai ***@***.*** https://github.com/CLO-Ontology/CLO<https://github.com/CLO-Ontology/CLO> clyh <http://www.obofoundry.org/ontology/clyh<http://www.obofoundry.org/ontology/clyh>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Lucas Leclere ***@***.*** @L-Leclere <https://github.com/L-Leclere<https://github.com/L-Leclere>> https://github.com/EBISPOT/clyh_ontology<https://github.com/EBISPOT/clyh_ontology> cro <http://www.obofoundry.org/ontology/cro<http://www.obofoundry.org/ontology/cro>> CC-BY https://creativecommons.org/licenses/by/2.0/<https://creativecommons.org/licenses/by/2.0> Marijane White ***@***.*** @marijane <https://github.com/marijane<https://github.com/marijane>> https://github.com/data2health/contributor-role-ontology<https://github.com/data2health/contributor-role-ontology> cteno <http://www.obofoundry.org/ontology/cteno<http://www.obofoundry.org/ontology/cteno>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Chris Mungall ***@***.*** @cmungall <https://github.com/cmungall<https://github.com/cmungall>> https://github.com/obophenotype/ctenophore-ontology<https://github.com/obophenotype/ctenophore-ontology> cto <http://www.obofoundry.org/ontology/cto<http://www.obofoundry.org/ontology/cto>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Dr. Alpha Tom Kodamullil ***@***.*** @akodamullil <https://github.com/akodamullil<https://github.com/akodamullil>> https://github.com/ClinicalTrialOntology/CTO<https://github.com/ClinicalTrialOntology/CTO> dpo <http://www.obofoundry.org/ontology/dpo<http://www.obofoundry.org/ontology/dpo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Clare Pilgrim ***@***.*** https://github.com/FlyBase/drosophila-phenotype-ontology<https://github.com/FlyBase/drosophila-phenotype-ontology> dron <http://www.obofoundry.org/ontology/dron<http://www.obofoundry.org/ontology/dron>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> William Hogan ***@***.*** https://github.com/ufbmi/dron/<https://github.com/ufbmi/dron> duo <http://www.obofoundry.org/ontology/duo<http://www.obofoundry.org/ontology/duo>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Melanie Courtot ***@***.*** @mcourtot <https://github.com/mcourtot<https://github.com/mcourtot>> https://github.com/EBISPOT/DUO<https://github.com/EBISPOT/DUO> ecao <http://www.obofoundry.org/ontology/ecao<http://www.obofoundry.org/ontology/ecao>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Charles Ettensohn ***@***.*** @ettensohn <https://github.com/ettensohn<https://github.com/ettensohn>> https://github.com/echinoderm-ontology/ecao_ontology<https://github.com/echinoderm-ontology/ecao_ontology> ecocore <http://www.obofoundry.org/ontology/ecocore<http://www.obofoundry.org/ontology/ecocore>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Pier Luigi Buttigieg ***@***.*** @pbuttigieg <https://github.com/pbuttigieg<https://github.com/pbuttigieg>> https://github.com/EcologicalSemantics/ecocore<https://github.com/EcologicalSemantics/ecocore> envo <http://www.obofoundry.org/ontology/envo<http://www.obofoundry.org/ontology/envo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Pier Luigi Buttigieg ***@***.*** @pbuttigieg <https://github.com/pbuttigieg<https://github.com/pbuttigieg>> https://github.com/EnvironmentOntology/envo<https://github.com/EnvironmentOntology/envo> eupath <http://www.obofoundry.org/ontology/eupath<http://www.obofoundry.org/ontology/eupath>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Chris Stoeckert ***@***.*** @cstoeckert <https://github.com/cstoeckert<https://github.com/cstoeckert>> https://github.com/VEuPathDB-ontology/VEuPathDB-ontology<https://github.com/VEuPathDB-ontology/VEuPathDB-ontology> fbbt <http://www.obofoundry.org/ontology/fbbt<http://www.obofoundry.org/ontology/fbbt>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Clare Pilgrim ***@***.*** fbcv <http://www.obofoundry.org/ontology/fbcv<http://www.obofoundry.org/ontology/fbcv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Clare Pilgrim ***@***.*** https://github.com/FlyBase/flybase-controlled-vocabulary<https://github.com/FlyBase/flybase-controlled-vocabulary> fbdv <http://www.obofoundry.org/ontology/fbdv<http://www.obofoundry.org/ontology/fbdv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Clare Pilgrim ***@***.*** fobi <http://www.obofoundry.org/ontology/fobi<http://www.obofoundry.org/ontology/fobi>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Pol Castellano Escuder ***@***.*** @pcastellanoescuder <https://github.com/pcastellanoescuder<https://github.com/pcastellanoescuder>> https://github.com/pcastellanoescuder/FoodBiomarkerOntology<https://github.com/pcastellanoescuder/FoodBiomarkerOntology> foodon <http://www.obofoundry.org/ontology/foodon<http://www.obofoundry.org/ontology/foodon>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Damion Dooley ***@***.*** @Public-Health-Bioinformatics <https://github.com/Public-Health-Bioinformatics<https://github.com/Public-Health-Bioinformatics>> https://github.com/FoodOntology/foodon<https://github.com/FoodOntology/foodon> fypo <http://www.obofoundry.org/ontology/fypo<http://www.obofoundry.org/ontology/fypo>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Midori Harris ***@***.*** @mah11 <https://github.com/mah11<https://github.com/mah11>> https://github.com/pombase/fypo<https://github.com/pombase/fypo> genepio <http://www.obofoundry.org/ontology/genepio<http://www.obofoundry.org/ontology/genepio>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Damion Dooley ***@***.*** https://github.com/GenEpiO/genepio<https://github.com/GenEpiO/genepio> geno <http://www.obofoundry.org/ontology/geno<http://www.obofoundry.org/ontology/geno>> CC-BY-SA https://creativecommons.org/licenses/by-sa/2.0/<https://creativecommons.org/licenses/by-sa/2.0> Matthew Brush ***@***.*** @mbrush <https://github.com/mbrush<https://github.com/mbrush>> https://github.com/monarch-initiative/GENO-ontology<https://github.com/monarch-initiative/GENO-ontology> hsapdv <http://www.obofoundry.org/ontology/hsapdv<http://www.obofoundry.org/ontology/hsapdv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies<https://github.com/obophenotype/developmental-stage-ontologies> hso <http://www.obofoundry.org/ontology/hso<http://www.obofoundry.org/ontology/hso>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Fernanda Dorea ***@***.*** @nandadorea <https://github.com/nandadorea<https://github.com/nandadorea>> https://github.com/SVA-SE/HSO<https://github.com/SVA-SE/HSO> iao <http://www.obofoundry.org/ontology/iao<http://www.obofoundry.org/ontology/iao>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Jie Zheng ***@***.*** @zhengj2007 <https://github.com/zhengj2007<https://github.com/zhengj2007>> https://github.com/information-artifact-ontology/IAO<https://github.com/information-artifact-ontology/IAO> iceo <http://www.obofoundry.org/ontology/iceo<http://www.obofoundry.org/ontology/iceo>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Meng LIU ***@***.*** https://github.com/ontoice/ICEO<https://github.com/ontoice/ICEO> ico <http://www.obofoundry.org/ontology/ico<http://www.obofoundry.org/ontology/ico>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqun Oliver He ***@***.*** @yongqunh <https://github.com/yongqunh<https://github.com/yongqunh>> https://github.com/ICO-ontology/ICO<https://github.com/ICO-ontology/ICO> ino <http://www.obofoundry.org/ontology/ino<http://www.obofoundry.org/ontology/ino>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqun Oliver He ***@***.*** https://github.com/INO-ontology/ino<https://github.com/INO-ontology/ino> maxo <http://www.obofoundry.org/ontology/maxo<http://www.obofoundry.org/ontology/maxo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Leigh Carmody ***@***.*** @LCCarmody <https://github.com/LCCarmody<https://github.com/LCCarmody>> https://github.com/monarch-initiative/MAxO<https://github.com/monarch-initiative/MAxO> mco <http://www.obofoundry.org/ontology/mco<http://www.obofoundry.org/ontology/mco>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Citlalli Mejía-Almonte ***@***.*** https://github.com/microbial-conditions-ontology/microbial-conditions-ontology<https://github.com/microbial-conditions-ontology/microbial-conditions-ontology> mf <http://www.obofoundry.org/ontology/mf<http://www.obofoundry.org/ontology/mf>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Janna Hastings ***@***.*** @jannahastings <https://github.com/jannahastings<https://github.com/jannahastings>> https://github.com/jannahastings/mental-functioning-ontology<https://github.com/jannahastings/mental-functioning-ontology> mfmo <http://www.obofoundry.org/ontology/mfmo<http://www.obofoundry.org/ontology/mfmo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Robert Druzinsky ***@***.*** @RDruzinsky <https://github.com/RDruzinsky<https://github.com/RDruzinsky>> https://github.com/RDruzinsky/feedontology<https://github.com/RDruzinsky/feedontology> mfoem <http://www.obofoundry.org/ontology/mfoem<http://www.obofoundry.org/ontology/mfoem>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Janna Hastings ***@***.*** @jannahastings <https://github.com/jannahastings<https://github.com/jannahastings>> https://github.com/jannahastings/emotion-ontology<https://github.com/jannahastings/emotion-ontology> mfomd <http://www.obofoundry.org/ontology/mfomd<http://www.obofoundry.org/ontology/mfomd>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Janna Hastings ***@***.*** https://github.com/jannahastings/mental-functioning-ontology<https://github.com/jannahastings/mental-functioning-ontology> mmusdv <http://www.obofoundry.org/ontology/mmusdv<http://www.obofoundry.org/ontology/mmusdv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies<https://github.com/obophenotype/developmental-stage-ontologies> mpath <http://www.obofoundry.org/ontology/mpath<http://www.obofoundry.org/ontology/mpath>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Paul Schofield ***@***.*** https://github.com/PaulNSchofield/mpath<https://github.com/PaulNSchofield/mpath> mpio <http://www.obofoundry.org/ontology/mpio<http://www.obofoundry.org/ontology/mpio>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Mathias Brochhausen ***@***.*** @mbrochhausen <https://github.com/mbrochhausen<https://github.com/mbrochhausen>> https://github.com/MPIO-Developers/MPIO<https://github.com/MPIO-Developers/MPIO> mro <http://www.obofoundry.org/ontology/mro<http://www.obofoundry.org/ontology/mro>> CC-BY https://creativecommons.org/licenses/by/3.0/<https://creativecommons.org/licenses/by/3.0/> Bjoern Peters ***@***.*** @bpeters42 <https://github.com/bpeters42<https://github.com/bpeters42>> https://github.com/IEDB/MRO<https://github.com/IEDB/MRO> ms <http://www.obofoundry.org/ontology/ms<http://www.obofoundry.org/ontology/ms>> CC-BY https://creativecommons.org/licenses/by/3.0/<https://creativecommons.org/licenses/by/3.0/> Gerhard Mayer ***@***.*** https://github.com/HUPO-PSI/psi-ms-CV<https://github.com/HUPO-PSI/psi-ms-CV> nbo <http://www.obofoundry.org/ontology/nbo<http://www.obofoundry.org/ontology/nbo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> George Gkoutos ***@***.*** @gkoutos <https://github.com/gkoutos<https://github.com/gkoutos>> https://github.com/obo-behavior/behavior-ontology<https://github.com/obo-behavior/behavior-ontology> oae <http://www.obofoundry.org/ontology/oae<http://www.obofoundry.org/ontology/oae>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqunh He ***@***.*** https://github.com/OAE-ontology/OAE<https://github.com/OAE-ontology/OAE> obcs <http://www.obofoundry.org/ontology/obcs<http://www.obofoundry.org/ontology/obcs>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Jie Zheng ***@***.*** https://github.com/obcs/obcs<https://github.com/obcs/obcs> obib <http://www.obofoundry.org/ontology/obib<http://www.obofoundry.org/ontology/obib>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Jie Zheng ***@***.*** https://github.com/biobanking/biobanking<https://github.com/biobanking/biobanking> ogg <http://www.obofoundry.org/ontology/ogg<http://www.obofoundry.org/ontology/ogg>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqun Oliver He ***@***.*** ogms <http://www.obofoundry.org/ontology/ogms<http://www.obofoundry.org/ontology/ogms>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Brian Aevermann ***@***.*** https://github.com/OGMS/ogms<https://github.com/OGMS/ogms> ohd <http://www.obofoundry.org/ontology/ohd<http://www.obofoundry.org/ontology/ohd>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Alan Ruttenberg ***@***.*** ohmi <http://www.obofoundry.org/ontology/ohmi<http://www.obofoundry.org/ontology/ohmi>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Yongqun Oliver He ***@***.*** https://github.com/ohmi-ontology/ohmi<https://github.com/ohmi-ontology/ohmi> ohpi <http://www.obofoundry.org/ontology/ohpi<http://www.obofoundry.org/ontology/ohpi>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Edison Ong ***@***.*** https://github.com/OHPI/ohpi<https://github.com/OHPI/ohpi> olatdv <http://www.obofoundry.org/ontology/olatdv<http://www.obofoundry.org/ontology/olatdv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies<https://github.com/obophenotype/developmental-stage-ontologies> omp <http://www.obofoundry.org/ontology/omp<http://www.obofoundry.org/ontology/omp>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> James C. Hu ***@***.*** https://github.com/microbialphenotypes/OMP-ontology<https://github.com/microbialphenotypes/OMP-ontology> one <http://www.obofoundry.org/ontology/one<http://www.obofoundry.org/ontology/one>> CC-BY https://creativecommons.org/licenses/by/4.0/<https://creativecommons.org/licenses/by/4.0/> Chen Yang ***@***.*** @cyang0128 <https://github.com/cyang0128<https://github.com/cyang0128>> https://github.com/cyang0128/Nutritional-epidemiologic-ontologies<https://github.com/cyang0128/Nutritional-epidemiologic-ontologies> ons <http://www.obofoundry.org/ontology/ons<http://www.obofoundry.org/ontology/ons>> CC-BY https://creativecommons.org/licenses/by/4.0/<https://creativecommons.org/licenses/by/4.0/> Francesco Vitali ***@***.*** @FrancescoVit <https://github.com/FrancescoVit<https://github.com/FrancescoVit>> https://github.com/enpadasi/Ontology-for-Nutritional-Studies<https://github.com/enpadasi/Ontology-for-Nutritional-Studies> ontoneo <http://www.obofoundry.org/ontology/ontoneo<http://www.obofoundry.org/ontology/ontoneo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Fernanda Farinelli ***@***.*** https://github.com/ontoneo-project/Ontoneo<https://github.com/ontoneo-project/Ontoneo> oostt <http://www.obofoundry.org/ontology/oostt<http://www.obofoundry.org/ontology/oostt>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Mathias Brochhausen ***@***.*** https://github.com/OOSTT/OOSTT<https://github.com/OOSTT/OOSTT> opmi <http://www.obofoundry.org/ontology/opmi<http://www.obofoundry.org/ontology/opmi>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Yongqun Oliver He ***@***.*** https://github.com/OPMI/opmi<https://github.com/OPMI/opmi> ornaseq <http://www.obofoundry.org/ontology/ornaseq<http://www.obofoundry.org/ontology/ornaseq>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Stephen Fisher ***@***.*** https://github.com/safisher/ornaseq<https://github.com/safisher/ornaseq> ovae <http://www.obofoundry.org/ontology/ovae<http://www.obofoundry.org/ontology/ovae>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqunh He ***@***.*** https://github.com/OVAE-Ontology/ovae<https://github.com/OVAE-Ontology/ovae> pato <http://www.obofoundry.org/ontology/pato<http://www.obofoundry.org/ontology/pato>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> George Gkoutos ***@***.*** @gkoutos <https://github.com/gkoutos<https://github.com/gkoutos>> https://github.com/pato-ontology/pato/<https://github.com/pato-ontology/pato> pdumdv <http://www.obofoundry.org/ontology/pdumdv<http://www.obofoundry.org/ontology/pdumdv>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> bgee ***@***.*** https://github.com/obophenotype/developmental-stage-ontologies<https://github.com/obophenotype/developmental-stage-ontologies> phipo <http://www.obofoundry.org/ontology/phipo<http://www.obofoundry.org/ontology/phipo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Alayne Cuzick ***@***.*** https://github.com/PHI-base/phipo<https://github.com/PHI-base/phipo> plana <http://www.obofoundry.org/ontology/plana<http://www.obofoundry.org/ontology/plana>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Sofia Robb ***@***.*** https://github.com/obophenotype/planaria-ontology<https://github.com/obophenotype/planaria-ontology> planp <http://www.obofoundry.org/ontology/planp<http://www.obofoundry.org/ontology/planp>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Sofia Robb ***@***.*** https://github.com/obophenotype/planarian-phenotype-ontology<https://github.com/obophenotype/planarian-phenotype-ontology> poro <http://www.obofoundry.org/ontology/poro<http://www.obofoundry.org/ontology/poro>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Bob Thacker ***@***.*** https://github.com/obophenotype/porifera-ontology<https://github.com/obophenotype/porifera-ontology> ppo <http://www.obofoundry.org/ontology/ppo<http://www.obofoundry.org/ontology/ppo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Ramona Walls ***@***.*** https://github.com/PlantPhenoOntology/PPO<https://github.com/PlantPhenoOntology/PPO> pr <http://www.obofoundry.org/ontology/pr<http://www.obofoundry.org/ontology/pr>> CC-BY http://creativecommons.org/licenses/by/4.0/<http://creativecommons.org/licenses/by/4.0/> Darren Natale ***@***.*** @nataled <https://github.com/nataled<https://github.com/nataled>> https://github.com/PROconsortium/PRoteinOntology<https://github.com/PROconsortium/PRoteinOntology> psdo <http://www.obofoundry.org/ontology/psdo<http://www.obofoundry.org/ontology/psdo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Zach Landis-Lewis ***@***.*** https://github.com/Display-Lab/psdo<https://github.com/Display-Lab/psdo> pso <http://www.obofoundry.org/ontology/pso<http://www.obofoundry.org/ontology/pso>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Laurel Cooper ***@***.*** https://github.com/Planteome/plant-stress-ontology<https://github.com/Planteome/plant-stress-ontology> pw <http://www.obofoundry.org/ontology/pw<http://www.obofoundry.org/ontology/pw>> CC-BY https://creativecommons.org/licenses/by/4.0/<https://creativecommons.org/licenses/by/4.0/> G. Thomas Hayman ***@***.*** https://github.com/rat-genome-database/PW-Pathway-Ontology<https://github.com/rat-genome-database/PW-Pathway-Ontology> rbo <http://www.obofoundry.org/ontology/rbo<http://www.obofoundry.org/ontology/rbo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Daniel C. Berrios ***@***.*** @DanBerrios <https://github.com/DanBerrios<https://github.com/DanBerrios>> https://github.com/Radiobiology-Informatics-Consortium/RBO<https://github.com/Radiobiology-Informatics-Consortium/RBO> sepio <http://www.obofoundry.org/ontology/sepio<http://www.obofoundry.org/ontology/sepio>> CC-BY https://creativecommons.org/licenses/by/3.0/<https://creativecommons.org/licenses/by/3.0/> Matthew Brush ***@***.*** https://github.com/monarch-initiative/SEPIO-ontology<https://github.com/monarch-initiative/SEPIO-ontology> stato <http://www.obofoundry.org/ontology/stato<http://www.obofoundry.org/ontology/stato>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Alejandra Gonzalez-Beltran ***@***.*** https://github.com/ISA-tools/stato<https://github.com/ISA-tools/stato> uberon <http://www.obofoundry.org/ontology/uberon<http://www.obofoundry.org/ontology/uberon>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Chris Mungall ***@***.*** https://github.com/obophenotype/uberon<https://github.com/obophenotype/uberon> uo <http://www.obofoundry.org/ontology/uo<http://www.obofoundry.org/ontology/uo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> George Gkoutos ***@***.*** https://github.com/bio-ontology-research-group/unit-ontology<https://github.com/bio-ontology-research-group/unit-ontology> vo <http://www.obofoundry.org/ontology/vo<http://www.obofoundry.org/ontology/vo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yongqunh He ***@***.*** https://github.com/vaccineontology/VO<https://github.com/vaccineontology/VO> xao <http://www.obofoundry.org/ontology/xao<http://www.obofoundry.org/ontology/xao>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Erik Segerdell ***@***.*** @seger <https://github.com/seger<https://github.com/seger>> https://github.com/xenopus-anatomy/xao<https://github.com/xenopus-anatomy/xao> xlmod <http://www.obofoundry.org/ontology/xlmod<http://www.obofoundry.org/ontology/xlmod>> CC-BY https://creativecommons.org/licenses/by/3.0/<https://creativecommons.org/licenses/by/3.0/> Gerhard Mayer ***@***.*** https://github.com/HUPO-PSI/mzIdentML<https://github.com/HUPO-PSI/mzIdentML> xpo <http://www.obofoundry.org/ontology/xpo<http://www.obofoundry.org/ontology/xpo>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Erik Segerdell ***@***.*** @seger <https://github.com/seger<https://github.com/seger>> https://github.com/obophenotype/xenopus-phenotype-ontology<https://github.com/obophenotype/xenopus-phenotype-ontology> zeco <http://www.obofoundry.org/ontology/zeco<http://www.obofoundry.org/ontology/zeco>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yvonne Bradford ***@***.*** https://github.com/ybradford/zebrafish-experimental-conditions-ontology<https://github.com/ybradford/zebrafish-experimental-conditions-ontology> zfa <http://www.obofoundry.org/ontology/zfa<http://www.obofoundry.org/ontology/zfa>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Ceri Van Slyke ***@***.*** @cerivs <https://github.com/cerivs<https://github.com/cerivs>> https://github.com/cerivs/zebrafish-anatomical-ontology<https://github.com/cerivs/zebrafish-anatomical-ontology> zp <http://www.obofoundry.org/ontology/zp<http://www.obofoundry.org/ontology/zp>> CC-BY http://creativecommons.org/licenses/by/3.0/<http://creativecommons.org/licenses/by/3.0/> Yvonne Bradford ***@***.*** https://github.com/obophenotype/zebrafish-phenotype-ontology<https://github.com/obophenotype/zebrafish-phenotype-ontology> This table was generated with the following Python code: from tabulate import tabulate from bioregistry.external.obofoundry import get_obofoundry from bioregistry.license_standardizer import standardize_license def main(): rows = [] for key, entry in sorted(get_obofoundry(force_download=True).items()): if entry["deprecated"] or entry["inactive"]: continue license_label = entry.get("license") license_url = entry.get("license.url") if license_label is None and license_url is None: continue # if license_label is None or license_url is None: # raise ValueError if standardize_license(license_url) != standardize_license(license_label): contact_email = entry.get("contact", "") contact_name = entry.get("contact.label", "") contact_github = entry.get("contact.github", "") repository = entry.get("repository", "") rows.append( ( f"[{key}](http://www.obofoundry.org/ontology/{key}<http://www.obofoundry.org/ontology/{key}>)", license_label, license_url, contact_name, contact_email, contact_github and f"@{contact_github}", repository, ) ) print( tabulate( rows, headers=[ "prefix", "license_label", "license_url", "contact", "email", "github", "tracker", ], tablefmt="github", ) ) if __name__ == "__main__": main() — You are receiving this because you were mentioned. 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[matentzn]

Just to be clear, no one made a mistake here.. CC-BY is a legal label for the cc-by 3 license, and the only offender here is me who thought that this kind of ambiguity is fine :). I do think though that a standardised label is indeed better.

To fully complete this ticket,

• Change the validation script to not allow CC-BY in the label

[cthoyt]

@matentzn same for CC-BY-SA or any of the other licenses that should have a version number associated with them

[matentzn]

Yeah, just make a PR on the schema when you are done, its easy to see what needs changing: https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/util/schema/registry_schema.json#L214