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Release 0.0.0a17 #173

Merged
merged 17 commits into from
Dec 4, 2019
Merged

Release 0.0.0a17 #173

merged 17 commits into from
Dec 4, 2019

Commits on Oct 22, 2019

  1. Add helper function and test case to deal with timepoint-specific par… 

    …ameters flatten_timepoint_specific_output_overrides (#128) (Closes #125)

Co-authored-by: elba.raimundez <elba.raimundez@helmholtz-muenchen.de>
    @dweindl
    elba.raimundez authored and dweindl committed Oct 22, 2019
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  2. Add functionality to create data summary report (#140) (#141) 

    * Add basic model / data summary HTML report (#140)

* Create example report from pytest
    @dweindl
    dweindl committed Oct 22, 2019
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Commits on Nov 29, 2019

  1. Fix get_noise_distributions: so far we got 'normal' everywhere due to… 

    … wrong grouping (#147)
    @dweindl
    dweindl committed Nov 29, 2019
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  2. Fix create_parameter_df: Exclude rule targets (#149) 

    * Fix create_parameter_df: Exclude rule targets

* Update test
    @dweindl
    dweindl committed Nov 29, 2019
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  3. Verify condition table column names occur as model parameters (Closes #… 

    …150) (#151)
    @dweindl
    dweindl committed Nov 29, 2019
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  4. Fixup #151: ignore conditionName column (#153)

    @dweindl
    dweindl committed Nov 29, 2019
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  5. More informative error messages in case of wrongly set observable and… 

    … noise parameters (Closes #118) (#155)
    @dweindl
    dweindl committed Nov 29, 2019
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Commits on Dec 2, 2019

  1. Update doc for copasi import and github installation (#158)

    @dweindl @erikadudki
    dweindl authored and erikadudki committed Dec 2, 2019
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  2. Extend validator to check if all required parameters are present in p… 

    …arameter table (Closes #43) (#159)
    @dweindl
    dweindl committed Dec 2, 2019
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Commits on Dec 3, 2019

  1. Setup documentation for RTD (#161) 

    * Create sphinx config and basic documentation pages (#135)

* Fix sphinx errors

* Support for markdown tables

* Add requirements files for building docs

Closes #135
    @dweindl
    dweindl committed Dec 3, 2019
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  2. Handle None in petab.core.split_parameter_replacement_list (Closes #121)

    @dweindl
    dweindl committed Dec 3, 2019
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  3. Fix(lint) correct handling of optional columns. Check before access.

    @dweindl
    dweindl committed Dec 3, 2019
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  4. Visualization, allow empty column observableParameters (measurement-f… 

    …ile) (#164)

* add handling of empty observableParameters column in measurement file
 
* addresses #162
    @erikadudki
    erikadudki committed Dec 3, 2019
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Commits on Dec 4, 2019

  1. Cleanup (#167) 

    * pylint stuff

* optimize imports
    @dweindl
    dweindl committed Dec 4, 2019
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  2. Add CHANGELOG (Closes #137) 

    (In future, please update on merge to `develop`)
    @dweindl
    dweindl committed Dec 4, 2019
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  3. Remove obsolete generate_experiment_id.py (Closes #111)

    @dweindl
    dweindl committed Dec 4, 2019
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  4. Bump version number to 0.0.0a17 and update ChangeLog

    @dweindl
    dweindl committed Dec 4, 2019
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