Release 0.1.8

[yannikschaelte]

Library:

• Use core.is_empty to check for empty values (Use core.is_empty instead of np.isnan. Closes #433 #434)
• Move tests to python 3.8 (Update tests #435)
• Update to libcombine 0.2.6 (update libcombine version to 0.2.6 after fix #437)
• Make float parsing from CSV round-trip (Make float parsing from CSV round-trip #444)
• Lint: Allow model time in observable formulas (Allow model time in observable formulas #445)
• Lint: Detect duplicated observable ids (Lint: detect duplicated observable IDs #446)
• Fix likelihood calculation with missing values (Fix calculate_llh and calculate_llh #451)

Documentation:

• Move format documentation to restructuredtext format (Write format specification in rst + add noise model description #452)
• Document all noise distributions and observable scales (Write format specification in rst + add noise model description #452)
• Fix documentation for prior distribution (Fix documentation for prior distribution (Closes #448) #449)

Visualization:

• Make XValue column non-mandatory (Visualization column XValue not mandatory anymore #429)
• Apply correct condition sorting (add sorting of indices of dataframes for the correct sorting of x-values #430)
• Apply correct default x label (default value for the column x_label in vis_spec #431)

[codecov]

Codecov Report

Merging #454 into master will decrease coverage by 0.03%.
The diff coverage is 73.43%.

@@            Coverage Diff             @@
##           master     #454      +/-   ##
==========================================
- Coverage   78.05%   78.02%   -0.04%     
==========================================
  Files          22       22              
  Lines        2183     2225      +42     
  Branches      517      531      +14     
==========================================
+ Hits         1704     1736      +32     
- Misses        355      363       +8     
- Partials      124      126       +2     

Impacted Files	Coverage Δ
petab/parameter_mapping.py	68.39% <0.00%> (ø)
petab/sbml.py	51.66% <0.00%> (ø)
petab/visualize/plotting_config.py	56.98% <66.66%> (+0.66%)	⬆️
petab/visualize/helper_functions.py	83.44% <67.85%> (-1.58%)	⬇️
petab/lint.py	77.77% <92.85%> (+0.82%)	⬆️
petab/calculate.py	89.47% <100.00%> (+0.16%)	⬆️
petab/conditions.py	90.47% <100.00%> (ø)
petab/core.py	82.91% <100.00%> (ø)
petab/measurements.py	80.24% <100.00%> (ø)
petab/observables.py	96.61% <100.00%> (ø)
... and 2 more

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