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@dweindl dweindl commented Mar 23, 2021

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dweindl and others added 6 commits March 22, 2021 15:08
…meters (#51)

Parameter mapping: Add option to ignore time-point specific noiseParameters...

... in case those are fixed values and noiseFormula consists only of one single parameter.
* Add .readthedocs.yaml

* petab

* add_stylesheet

* ipython

* rm doc/editorial_board.rst

* excludes

* link all examples

* set dep versions

* fix docstring

* ignore numpy warnings

* fix docstring

* ignore recommonmark warnings

* Fix collections.Counter issues

* move deps to setup.py

* py38
* Doc: Intersphinx and source references

* some docstring fixes

* fix some more

* sphinx-autodoc-typehints

* Revert "sphinx-autodoc-typehints"

This reverts commit 997f07f.
* Link docs

* docstring

* raise

* format

* Remove PEtab process

* Apply suggestions from code review

Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>

Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>
@dweindl dweindl requested a review from yannikschaelte March 23, 2021 16:10
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codecov-io commented Mar 23, 2021

Codecov Report

Merging #55 (e4733ad) into master (4316416) will increase coverage by 0.04%.
The diff coverage is 85.71%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #55      +/-   ##
==========================================
+ Coverage   78.80%   78.85%   +0.04%     
==========================================
  Files          24       24              
  Lines        2317     2317              
  Branches      548      547       -1     
==========================================
+ Hits         1826     1827       +1     
  Misses        359      359              
+ Partials      132      131       -1     
Impacted Files Coverage Δ
petab/calculate.py 90.22% <ø> (+0.75%) ⬆️
petab/composite_problem.py 45.83% <ø> (ø)
petab/conditions.py 90.47% <ø> (ø)
petab/core.py 85.49% <ø> (ø)
petab/lint.py 78.54% <ø> (ø)
petab/parameters.py 86.45% <ø> (ø)
petab/problem.py 71.36% <ø> (ø)
petab/sbml.py 57.35% <ø> (ø)
petab/parameter_mapping.py 68.39% <80.00%> (ø)
petab/observables.py 97.10% <100.00%> (ø)
... and 1 more

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## 0.1 series

### 0.1.18
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at some point dates may be quite helpful to include here --

@dweindl dweindl merged commit 2a164df into master Mar 23, 2021
@dweindl dweindl deleted the release_0.1.18 branch March 23, 2021 16:20
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4 participants