v1.0.0

What's Changed

• 0.2.0 by @Paururo in #1
• Rebuild the run report, publish the docs, and add a runnable tutorial by @Paururo in #2
• Adapt the logo and the benchmark figure for dark backgrounds by @Paururo in #3
• Link the documentation where it actually resolves by @Paururo in #4
• Cut the README to a front door, and bring over the lab's automation by @Paururo in #5
• cargo: bump the cargo-routine group with 5 updates by @dependabot[bot] in #6
• docs: update mkdocs-material requirement from <10,>=9.6 to >=9.7.7,<10 by @dependabot[bot] in #7
• actions: bump the actions-major group with 7 updates by @dependabot[bot] in #8
• cargo: bump the cargo-routine group with 2 updates by @dependabot[bot] in #9
• ci: let the auto-merge job read the checks it waits on by @Paururo in #11
• actions: bump github/codeql-action from 3 to 4 in the actions-major group by @dependabot[bot] in #10
• fix: read every member of a multi-member gzip, not just the first by @Paururo in #12
• ci: wait for the CI check under the name it is published as by @Paururo in #14
• cargo: bump clap from 4.6.6 to 4.6.7 in the cargo-routine group by @dependabot[bot] in #13
• fix: search each gap genome alone, with exact identity by @Paururo in #15
• fix: correctness bugs from the bug hunt by @Paururo in #16
• feat: a report that explains every correction, at any scale, and bug fixes by @Paururo in #17
• Frame-aware stops, origin-spanning genes, not-searched cells, and pinning in the report by @Paururo in #18
• Carry gaps never searched into the evolutionary audit and run comparison by @Paururo in #19
• Read PPanGGOLiN, PanTA and PIRATE; write an Rtab and rescued sequences; cache searches; faster large runs by @Paururo in #20
• Keep annotations and gene lookups compact: memory stops growing megabytes per genome by @Paururo in #21
• A short website that gets people running, checked against the code in CI by @Paururo in #22
• Website: dark by default, explains its matrix and policies, GitHub one click away by @Paururo in #23
• docs: a Docs tab, light code boxes, and an illustrated How it works page by @Paururo in #24
• docs: a README in the website's words that sends readers to the site by @Paururo in #25
• docs: a light How it works preview, and a logo that follows the theme again by @Paururo in #26
• chore: one licence, a citation file, synthetic-data notes and a portable benchmark by @Paururo in #27
• release: 1.0.0 by @Paururo in #28

New Contributors

• @Paururo made their first contribution in #1
• @dependabot[bot] made their first contribution in #6

Full Changelog: v0.2.0...v1.0.0

v0.1.0

Full Changelog: https://github.com/PathoGenOmics-Lab/recore/commits/v0.1.0