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@SamBryce-Smith SamBryce-Smith released this 03 Jan 15:08
v0.1.0
4170a50
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Learn about vigilant mode.

Simplified implementation of pipeline to quantify pre-specified splice junctions from STAR SJ.out.tab files:

  • Config YAML file for run-specific parameters
  • Conda environment to manage dependencies
  • Remove all references to PSI calculation. Only SJ read counting is performed
  • Updates to documentation, including how to define junction coordinates compatible with the pipeline
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