0.2.0.dev14

Breaking Changes

• Drop support for Python 3.9 by @GlassOfWhiskey in #827

What's Changed

• Refactor processors' logic for async execution by @GlassOfWhiskey in #789
• Make CommandOutputProcessor handle Future objs by @GlassOfWhiskey in #790
• Refactor TokenProcessor and CommandOutputProcessor classes by @GlassOfWhiskey in #793
• Add support for CWL v1.3 by @GlassOfWhiskey in #802
• Update versions in CI/CD pipeline by @GlassOfWhiskey in #806
• Refactor exit code evaluation by @LanderOtto in #799
• Fixed issues related to default values in CWL by @LanderOtto in #808
• Added a check for the chosen deployment in the tests by @LanderOtto in #814
• Fixed recoverable attribute in the ListToken and ObjectToken classes by @LanderOtto in #752
• Add support for Python 3.14 by @GlassOfWhiskey in #820
• Refactor handling of File and Directory literals by @LanderOtto in #811
• Fixed issue on multiple exampleOfWork on RunCrate provenance by @LanderOtto in #841
• Fixed issue in DependencyResolver by @LanderOtto in #839
• Fix Lima version to v1.2.2 by @GlassOfWhiskey in #850
• Remove disable-content-trust in DockerConnector by @GlassOfWhiskey in #856
• Remove Lima version from MacOS CI by @GlassOfWhiskey in #859
• Remove TransferStep from CWL ExpressionTool by @GlassOfWhiskey in #860
• Fixed loadContents in the collector step by @LanderOtto in #846
• Fix race condition with output unique paths by @GlassOfWhiskey in #863
• Fix minor issues on recovery by @LanderOtto in #862
• Adjust Python cache in GitHub CI/CD by @GlassOfWhiskey in #865
• Fixed CWLObjectCommandOutputProcessor to handle arrays of records by @LanderOtto in #858
• Added checks for CWL feature requirement by @GlassOfWhiskey in #866
• Fixed eval method of the DependencyResolver by @LanderOtto in #867
• Handle location storage retrieval errors by @LanderOtto in #871
• Fix StreamFlowContext by @LanderOtto in #880
• Update MacOS X CI/CD to version 15 by @GlassOfWhiskey in #819
• Fixed directory registration by @LanderOtto in #881
• Reduced overhead of the transfer_data method by @LanderOtto in #883
• Revert sphinx to v8.1.3 by @GlassOfWhiskey in #888
• Migrate to uv package manager by @GlassOfWhiskey in #889
• Fixed type checking in CWLCommandTokenProcessor by @LanderOtto in #895
• Respect available CPUs in LocalConnector by @mr-c in #896
• Fix issues in the ValueFromTransformer and LoopValueFromTransformer classes by @LanderOtto in #882
• Fixed StreamFlowContext creation by @LanderOtto in #901
• Added MatchingBindingFilter by @LanderOtto in #872
• Fixed transfer of hardlink by @LanderOtto in #891
• Fixed ExpressionTool outputs processing by @LanderOtto in #902
• Fix cwl.output.json behaviour by @GlassOfWhiskey in #851
• Fix ext show command by @GlassOfWhiskey in #927

Dependencies

• Bump aiohttp from 3.12.15 to 3.13.0 by @dependabot[bot] in #821
• Bump aiohttp from 3.13.0 to 3.13.1 by @dependabot[bot] in #832
• Bump aiohttp from 3.13.1 to 3.13.2 by @dependabot[bot] in #840
• Bump aiosqlite from 0.21.0 to 0.22.0 by @dependabot[bot] in #898
• Bump aiosqlite from 0.22.0 to 0.22.1 by @dependabot[bot] in #906
• Bump asyncssh from 2.21.0 to 2.21.1 by @dependabot[bot] in #815
• Bump asyncssh from 2.21.1 to 2.22.0 by @dependabot[bot] in #918
• Bump bcrypt from 4.3.0 to 5.0.0 by @dependabot[bot] in #812
• Bump cachetools from 6.1.0 to 6.2.0 by @dependabot[bot] in #792
• Bump cachetools from 6.2.0 to 6.2.1 by @dependabot[bot] in #828
• Bump cachetools from 6.2.1 to 6.2.2 by @dependabot[bot] in #861
• Bump cachetools from 6.2.2 to 6.2.3 by @dependabot[bot] in #897
• Bump cwl-utils from 0.39 to 0.40 by @dependabot[bot] in #803
• Bump filelock from 3.20.0 to 3.20.3 by @dependabot[bot] in #917
• Bump importlib-metadata from 8.7.0 to 8.7.1 by @dependabot[bot] in #907
• Bump jsonschema from 4.25.0 to 4.25.1 by @dependabot[bot] in #786
• Bump jsonschema from 4.25.1 to 4.26.0 by @dependabot[bot] in #923
• Bump kaleido from 1.0.0 to 1.1.0 by @dependabot[bot] in #804
• Bump kaleido from 1.1.0 to 1.2.0 by @dependabot[bot] in #848
• Bump kubernetes-asyncio from 32.3.2 to 33.3.0 by @dependabot[bot] in #783
• Bump kubernetes-asyncio from 33.3.0 to 34.3.3 by @dependabot[bot] in #915
• Bump pandas from 2.3.1 to 2.3.2 by @dependabot[bot] in #788
• Bump pandas from 2.3.2 to 2.3.3 by @dependabot[bot] in #816
• Bump plotly from 6.2.0 to 6.3.0 by @dependabot[bot] in #784
• Bump plotly from 6.3.0 to 6.3.1 by @dependabot[bot] in #818
• Bump plotly from 6.3.1 to 6.4.0 by @dependabot[bot] in #847
• Bump plotly from 6.4.0 to 6.5.0 by @dependabot[bot] in #869
• Bump plotly from 6.5.0 to 6.5.1 by @dependabot[bot] in #905
• Bump plotly from 6.5.1 to 6.5.2 by @dependabot[bot] in #920
• Bump psutil from 7.0.0 to 7.1.0 by @dependabot[bot] in #807
• Bump psutil from 7.1.0 to 7.1.1 by @dependabot[bot] in #833
• Bump psutil from 7.1.1 to 7.1.2 by @dependabot[bot] in #837
• Bump psutil from 7.1.2 to 7.1.3 by @dependabot[bot] in #844
• Bump psutil from 7.1.3 to 7.2.1 by @dependabot[bot] in #914
• Bump rdflib from 7.1.4 to 7.2.1 by @dependabot[bot] in #809
• Bump rdflib from 7.2.1 to 7.4.0 by @dependabot[bot] in #842
• Bump rdflib from 7.4.0 to 7.5.0 by @dependabot[bot] in #877
• Bump referencing from 0.36.2 to 0.37.0 by @dependabot[bot] in #830
• Bump typing-extensions from 4.14.1 to 4.15.0 by @dependabot[bot] in #791
• Bump urllib3 from 2.6.1 to 2.6.3 by @dependabot[bot] in #921

Dev Dependencies

• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #782
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in #874
• Bump actions/download-artifact from 4 to 5 by @dependabot[bot] in #780
• Bump actions/download-artifact from 5 to 6 by @dependabot[bot] in #836
• Bump actions/download-artifact from 6 to 7 by @dependabot[bot] in #899
• Bump actions/setup-node from 4 to 5 by @dependabot[bot] in #796
• Bump actions/setup-node from 5 to 6 by @dependabot[bot] in #831
• Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #795
• Bump actions/upload-artifact from 4 to 5 by @dependabot[bot] in #838
• Bump actions/upload-artifact from 5 to 6 by @dependabot[bot] in #900
• Bump bandit from 1.8.6 to 1.9.1 by @dependabot[bot] in #868
• Bump bandit from 1.9.1 to 1.9.2 by @dependabot[bot] in #875
• Bump bandit from 1.9.2 to 1.9.3 by @dependabot[bot] in #924
• Bump black from 25.1.0 to 25.9.0 by @dependabot[bot] in #810
• Bump black from 25.9.0 to 25.11.0 by @dependabot[bot] in #854
• Bump black from 25.11.0 to 25.12.0 by @dependabot[bot] in #886
• Bump black from 25.12.0 to 26.1.0 by @dependabot[bot] in #925
• Bump cwltest from 2.6.20250314152537 to 2.6.20250818005349 by @dependabot[bot] in #785
• Bump cwltest from 2.6.20250818005349 to 2.6.20251216093331 by @dependabot[bot] in #909
• Bump cwltool from 3.1.20250715140722 to 3.1.20250925164626 by @dependabot[bot] in #813
• Bump cwltool from 3.1.20250925164626 to 3.1.20251031082601 by @dependabot[bot] in #843
• Bump cwltool from 3.1.20251031082601 to 3.1.20260108082145 by @dependabot[bot] in #911
• Bump flake8-bugbear from 24.12.12 to 25.10.21 by @dependabot[bot] in #834
• Bump flake8-bugbear from 25.10.21 to 25.11.29 by @dependabot[bot] in #879
• Bump github/codeql-action from 3 to 4 by @dependabot[bot] in #823
• Bump helm/kind-action from 1.12.0 to 1.13.0 by @dependabot[bot] in #845
• Bump isort from 6.0.1 to 6.1.0 by @dependabot[bot] in #817
• Bump isort from 6.1.0 to 7.0.0 by @dependabot[bot] in #829
• Bump mukunku/tag-exists-action from 1.6.0 to 1.7.0 by @dependabot[bot] in #890
• Bump pytest from 8.4.1 to 8.4.2 by @dependabot[bot] in #797
• Bump pytest from 8.4.2 to 9.0.2 by @dependabot[bot] in #887
• Bump pytest-asyncio from 1.1.0 to 1.2.0 by @dependabot[bot] in #805
• Bump pytest-asyncio from 1.2.0 to 1.3.0 by @dependabot[bot] in #855
• Bump pytest-cov from 6.2.1 to 7.0.0 by @dependabot[bot] in #801
• Bump pyupgrade from 3.20.0 to 3.21.0 by @dependabot[bot] in #824
• Bump pyupgrade from 3.21.0 to 3.21.1 by @dependabot[bot] in #852
• Bump pyupgrade from 3.21.1 to 3.21.2 by @dependabot[bot] in #870
• Bump sphinx-jsonschema from 1.19.1 to 1.19.2 by @dependabot[bot] in #878
• Bump sphinx-rtd-theme from 3.0.2 to 3.1.0 by @dependabot[bot] in #928
• Bump sphinx-llms-txt from 0.3.1 to 0.7.1 by @dependabot[bot] in #929

New Contributors

• @mr-c made their first contribution in #896

Full Changelog: 0.2.0.dev13...0.2.0.dev14