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bcfgothenburg
HT17
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Bioinformatics Core Facility Gothenburg edited this page
Aug 25, 2017
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Courses given during autumn 2017
SC00024:
Analysis of next generation sequencing data
SC00025:
Unix with applications to next generation sequencing data
SC00029:
Microarray analysis using R
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Home
Courses given during autumn 2017
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Analysis of next generation sequencing data
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CGH analysis
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Exome I: Intro
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Exome II: QC, filtering and mapping
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Exome III: Alignment processing and variant discovery
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Exome IV: Variant annotation and filtering
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Expression analysis
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GWAS
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Introduction to R and Bioconductor
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Introduction to statistics
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Mapping I: Intro
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Mapping II: Aligners
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Mapping III: Visualization
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Methylation analysis
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Microarray analysis using R
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QC I: Intro
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QC II: Quality check
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QC III: Library composition
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QC IV Quality filtering
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R CGH I: Intro
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R CGH II: Packages
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R CGH III: aCGH
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R CGH III: aCGH a
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R CGH IV: DNAcopy
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R CGH IX: Aroma III
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R CGH V: GLAD
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R CGH VII: Aroma Pipeline
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R CGH VIII: Aroma II
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R CGH X: Aroma IV
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R Expr 0: Instructions
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R Expr I: Install and load packages
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R Expr II: Read data
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R Expr III: Quality control
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R Expr IV: Annotation
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R Expr V: Data analysis
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R Expr VI: Results
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R Expr VII: If you have time
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R GWAS I: Instructions
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R GWAS II: Install packages and software
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R GWAS III: Quality control
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R GWAS IV: Data analysis
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R GWAS V: Results
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R GWAS VI: Plots
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R Intro I: Getting Started
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R Intro II: Working with scripts
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R Intro III: Data Frames
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R Intro IV: Reading and writing text files
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R Intro V: Plotting
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R Intro VI: Install Packages
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R Methy I: Intro
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R Methy II: Packages
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R Methy III: Read Data
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R Methy IV: Quality Control
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R Methy V: Normalization
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R Methy VI: Analysis
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R Methy VII: ChAMP
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R Methy VIII: ChAMP2
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R Statistics I: T test
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R Statistics II: Linear Regression
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R Statistics III: Logistic Regression
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Unix I: Connecting to the server
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Unix II: Some basic commands
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Unix III: Warm up exercises
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Unix IV: NGS data quality
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Unix V: Comparing two quantification methods
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Unix VI: Disease causing mutations
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Unix VII: Attempt of murder?
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Unix with applications to next generation sequencing data
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