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trishalaneeraj
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debajyotidatta,
galtay,
hakunanatasha,
jason-fries,
leonweber,
ruisi-su,
sg-wbi and
sunnnymskang
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* Create dataset loader for PsyTAR * Fix config instance when only data_dir passed * Style and remove unused dependency * fix: updates psytarclass to inherit from bb Co-authored-by: Natasha Seelam <nseelam1@gmail.com>
* Add support for n2c2 2010 * Add support for n2c2 2010 * Format code * Import BigBioConfig from utils; cosmetic refactor Co-authored-by: Ayush Singh <singh.ay@northeastern.edu>
| { | ||
| "text_1": datasets.Value("string"), | ||
| "text_2": datasets.Value("string"), | ||
| "label": datasets.Value("string"), |
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Change to float in the source schema?
* update README - add images for task assigment
* add pubmed_qa
* update pubmed_qa.py
* update question type to yesnomaybe, use [maybe, LONG_ANSWER] as the answer for PQA-Unlabeled
* fix: update to new qa schema
* remove unused files
* add 10-fold data for pqal (subset_id pqal_fold{k}_[source|bigbio]), remove LONG_ANSWER, update question type to yesno
* add 10-fold data for pqal (subset_id pqal_fold{k}_[source|bigbio]), remove LONG_ANSWER, update question type to yesno
* update pubmed_qa.py - add description for each dataset subset, change naming for the subset_id following bigbio convention, update None to BigBioValues.NULL on the bigbio schema
* format, remove print, add TODO
format, remove print, add TODO
Co-authored-by: Natasha Seelam <nseelam1@gmail.com>
Co-authored-by: Gabriel Altay <gabriel.altay@gmail.com>
* add back images that were removed in bigscience-workshop#357 * oops! rename images
* run tests by config name, cleaned up a bit * referenced -> existing referenced -> existing
rename n2c2_2006 -> n2c2_2006_smokers (bigscience-workshop#478)
* n2c2 2006 de-identification task * remove name == main block remove name == main block Co-authored-by: Gabriel Altay <gabriel.altay@gmail.com>
* Initial NLM-WSD commit * Further development * Further development * Reformat * add custom local config add custom local config * import dataclass import dataclass * fix custom config typos fix custom config typos Co-authored-by: Gabriel Altay <gabriel.altay@gmail.com>
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Hi @debajyotidatta I've addressed your comments in a new PR: #479 Could you please review the changes there and I'll go ahead and close this one? |
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Closes #161
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biodatasets/my_dataset/my_dataset.py(please use only lowercase and underscore for dataset naming)._CITATION,_DATASETNAME,_DESCRIPTION,_HOMEPAGE,_LICENSE,_URLs,_SUPPORTED_TASKS,_SOURCE_VERSION, and_BIGBIO_VERSIONvariables.NOTE: _LICENSE is "Unknown" in this case
_info(),_split_generators()and_generate_examples()in dataloader script.BUILDER_CONFIGSclass attribute is a list with at least oneBigBioConfigfor the source schema and one for a bigbio schema.datasets.load_datasetfunction.python -m tests.test_bigbio biodatasets/my_dataset/my_dataset.py.