v0.0.12

• Bumping fl_chart version

v0.0.11

• Improving projection visualizer 2D

v0.0.10

• Fixing visualizer name in README
• Adding two (B, O) rare or ambiguous amino acids to nucleotide map
• Adding getter for z dimension in projection_data

v0.0.9

0.0.9

• (BREAKING) Renaming "UMAP" to more general "Projection" term
  This includes the data class, the visualizer, file handling and test cases
• Updating dependencies

v0.0.8

0.0.8

• Adding testing strategy
• Making toMap more generic for bio entities
• Adding toString function for sequence
• Adding preliminary OneHotEncodingEmbedder

v0.0.5

0.0.5

Features

• Adding EmbeddingsCombiner
  Is able to combine two embeddings via a combining function, currently multiply elementwise and concatenation.
  Enables ProteinProteinInteraction to provide the getEmbeddings interface.
• Adding draft classes for AminoAcid and Atom to represent protein structure (work in progress)

Maintenance

• Multiple lines for sequences in protein fasta files are now allowed and concatenated
• File names are now automatically added to loaded entities (column name ExtractedDataset)
• Renaming BiologicalEntity to BioEntity
• Making nullableMerge applicable for non-comparable types
• Adding toMap() and getEmbeddings() to BioEntity interface
• Introducing functional error handling via fpdart, will be more widely adapted in future releases
• Moving package to biocentral organization
• Updating dependencies

v0.0.4

0.0.4

Maintenance

• Fixing image path in README

v0.0.3

0.0.3

Maintenance

• Fixing image path in README
• Renaming umap example to example.dart
• Fixing package description length

v0.0.2

v0.0.2

Maintenance

• Adding BSD License

v0.0.1

0.0.1

Initial release

Features

Widgets:

• UMAP Visualizer

Biological Data Classes:

• Protein
• Sequence: AminoAcidSequence, NucleotideSequence
• Protein-Protein Interaction
• Taxonomy

Protein Representation and Data Analysis:

• Embedding: PerSequence, PerResidue
• UMAP

File handling:

• Protein: fasta
• ProteinProteinInteraction: fasta
• Embedding: json
• UMAPData: csv
• CustomAttributes: csv