v0.0.5

0.0.5

Features

• Adding EmbeddingsCombiner
  Is able to combine two embeddings via a combining function, currently multiply elementwise and concatenation.
  Enables ProteinProteinInteraction to provide the getEmbeddings interface.
• Adding draft classes for AminoAcid and Atom to represent protein structure (work in progress)

Maintenance

• Multiple lines for sequences in protein fasta files are now allowed and concatenated
• File names are now automatically added to loaded entities (column name ExtractedDataset)
• Renaming BiologicalEntity to BioEntity
• Making nullableMerge applicable for non-comparable types
• Adding toMap() and getEmbeddings() to BioEntity interface
• Introducing functional error handling via fpdart, will be more widely adapted in future releases
• Moving package to biocentral organization
• Updating dependencies