v0.1.0

Plugin manifests in this first release

• alphamissense — plugins/alphamissense/alphamissense.source.toml
• cadd — plugins/cadd/cadd.source.toml
• clinvar — plugins/clinvar/clinvar.source.toml
• dbnsfp — plugins/dbnsfp/dbnsfp.source.toml
• spliceai — plugins/spliceai/spliceai.source.toml

Using this release

Pin this tag as the version of the manifest repository when building a plugin cache:

import vepyr

vepyr.build_plugin_cache(
    plugin="alphamissense",      # any directory under plugins/
    version="v0.1.0",
    source_path="AlphaMissense_hg38.tsv.gz",
    cache_dir="/data/116_GRCh38_merged",
    plugin_cache_root="/data/plugin_cache",
)

See Building a plugin cache.

What's Changed

• Add Claude Code GitHub Workflow by @mwiewior in #5
• Add five VEP plugin manifests with VEP 116 byte-parity semantics by @LucasJezap in #2
• fix(dbnsfp): declare canonical gzip source by @mwiewior in #6
• feat: declare tabix indexes for plugin sources by @mwiewior in #7
• docs: document the repo, its manifests and how vepyr consumes them by @mwiewior in #8
• feat: record upstream url and md5 for every plugin input file by @mwiewior in #9
• ci: manual semver release workflow with tag and release notes by @mwiewior in #10

New Contributors

• @LucasJezap made their first contribution in #2

Full Changelog: https://github.com/biodatageeks/vepyr-plugins/commits/v0.1.0