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plot-aesthetics, fixes for RNA-Seq, more depth diagnostics

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@brentp brentp released this 07 Feb 19:11
· 257 commits to master since this release

v0.1.2

  • allow lower-case reference alleles in case of masked genomes (see #5)
  • set relatedness values < -1.5 to -1.5 in the plot
  • fix bug that affected relatedness calcs especially in RNA-Seq
  • add more diagnostic values (allele-balance and number of non ref/alt bases)

see previous release for sites file. For hg38, it's possible to use: https://github.com/brentp/peddy/blob/master/peddy/GRCH38.sites
(if your chromosomes have the 'chr' prefix, that must be added to this sites file).