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v0.0.9

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@brentp brentp released this 04 Jan 17:26
v0.0.9
ed853fb

See below for full list of improvements. The biggest bug-fix is to fix a memory leak seen when annotating large files. The biggest change is to convert the scripting engine from javascript to lua. The reason for this was to improve the speed of user-defined functions. Now, functions defined in lua should be nearly as fast as the built-in functions but provide endless customization

v0.0.9

  • restore ability to take query file from STDIN (no tabix required).
  • fix memory leak. memory use now scales with number of procs (-p).
  • added new op 'self' which should be used for most cases when matching on ref and alt as it
    determines the type from the annotation header and uses that to update the annotated header
    with the correct type.
  • new documentation site
  • [[postannotation]] allows modifying stuff in the query VCF after annotation (or instead).
    See examples on the documentation site.
  • convert scripting engine to lua from javascript
  • add CADD conversion script and example
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