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Genohype v0.1.0

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@github-actions github-actions released this 20 Jul 16:32
· 23 commits to main since this release
v0.1.0
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Genohype v0.1.0

This is the first installable Genohype release. It packages the existing Hail-table and VCF processing engine, export paths, visualization commands, and GCP worker-pool tooling as prebuilt command-line binaries.

Included

  • Hail table and indexed VCF inspection and interval queries
  • Parquet, VCF, Hail, ClickHouse, Elasticsearch, PostgreSQL, and BigQuery export paths
  • Manhattan and locus-plot workflows
  • GCP distributed worker pools with the embedded pool dashboard
  • Full-featured builds with GCS, S3, HTTP, validation, database export, and VEP feature code enabled
  • A separate Linux genohype-worker asset used by macOS clients when deploying a GCP pool

Install

curl -fsSL https://raw.githubusercontent.com/broadinstitute/genohype/main/scripts/install.sh | sh
genohype --version

The installer verifies the published SHA-256 checksums and installs to $HOME/.local/bin by default.

Known limitations

  • Genohype is pre-1.0 software; command-line and library interfaces may change.
  • VEP/LOFTEE annotation support is experimental and uses a pinned Genohype integration revision of fastVEP.
  • The published Linux binary targets x86-64 glibc 2.17 or newer. Linux ARM64 is not included.
  • macOS binaries target macOS 12 or newer and are not notarized.
  • GCP pool commands require separately configured Google Cloud credentials and permissions.
  • genohype-server is not distributed as a separate release binary.
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