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v2.0.20.1

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@dpark01 dpark01 released this 17 Apr 19:11
v2.0.20.1
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Learn about vigilant mode.

This release includes some updates to the CI build, to reference based assembly workflows, and adds nextstrain workflows, along with other smaller tweaks.

  • add nextstrain augur workflow (#39)
  • add bams_multiqc workflow (#34)
  • improvements and updates to refbased assembly workflow, including accepting multiple bams per sample at input, scattering alignment jobs by bam, and merging and reheadering as needed (#33, #36)
  • VM tuning (#37, #31, #29)
  • update viral-core to 2.0.20.1
  • update viral-assemble to 2.0.17.0
  • changes to Travis CI build structure, with increased reliance on miniwdl (#38)
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