Skip to content

PairedTag_v2.0.0

Choose a tag to compare

View all tags
@github-actions github-actions released this 14 Apr 17:54
PairedTag_v2.0.0
5283cc7
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

2.0.0

2025-04-02 (Date of Last Commit)

  • Refactored the STAR alignment step in Optimus and removed tasks FastqProcessing and MergeSortBamFiles; we are no longer sharding. We are now running one instance of STAR
  • Removed MergeStarOutput tasks from Optimus pipeline; added necessary parts of MergeStarOutput task to the STAR alignment step (STARsoloFastq). Additional outputs added to STARsoloFastq task as a result; this includes row_index, col_index, sparse_counts, library_metrics, mtx_files, filtered_mtx_files and cell_reads_out
  • Updated the STAR docker image to include Samtools and Python
Assets 5
Loading