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@github-actions github-actions released this 08 May 13:14
SlideSeq_develop
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3.6.6

2026-04-02 (Date of Last Commit)

  • Removed the Optimus count_exons parameter from the Optimus pipeline (Optimus v9.0.0). The STARsoloFastqSlideSeq task used by SlideSeq is unaffected and retains its existing behavior.

  • Refactored STARsoloFastqSlideSeq to receive umi_len, cb_len, and solo_features as inputs (computed at the workflow level via the new ParseReadStructure task) rather than parsing the read structure and computing the soloFeatures string in bash. Pipeline outputs are unchanged.

  • Replaced internal Boolean? count_exons in STARsoloFastqSlideSeq with String exon_solo_directory; the workflow now passes a pre-computed directory path instead of a boolean, eliminating boolean logic from the task body. Pipeline inputs and outputs are unchanged.

2026-04-21 (Date of Last Commit)

  • Added an optional disk_override input to the CalculateUMIsMetrics task to allow users to override the default disk size; this does not affect the outputs of the pipeline
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