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UltimaGenomicsWholeGenomeCramOnly_v1.1.0

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UltimaGenomicsWholeGenomeCramOnly_v1.1.0
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1.1.0

2025-03-17 (Date of Last Commit)

  • Updated Picard docker for CompareMetrics from 2.20.4-SNAPSHOT to 2.26.10-SNAPSHOT to fix security vulnerability. The outputs of the CollectAggregationMetrics task have changed slightly: .alignment_summary_metrics now have additional columns SD_READ_LENGTH, MEDIAN_READ_LENGTH, MAD_READ_LENGTH, MIN_READ_LENGTH, MAX_READ_LENGTREADS_ALIGNED_IN_PAIRS, PCT_SOFTCLIP, PCT_HARDCLIP, AVG_POS_3PRIME_SOFTCLIP_LENGTH. Additionally, a histogram is now included in the .alignment_summary_metrics file
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