0.1.0 - 2026-08-22

Release Notes

Initial public release. It includes the preprint functionality plus the
post-preprint correctness, usability, and performance work reviewed for this
release.

• Make seqproc run require an exact, nonempty primary-output topology while
  preserving the deprecated flag-only prefix behavior for one compatibility
  cycle. Unassigned outputs likewise require exactly one target per input lane,
  and primary outputs combined with demultiplexing are rejected rather than
  silently ignored.

• Treat only a closed stdout pipe as normal Unix early-consumer termination
  (silent exit 0). ENOSPC, quota exhaustion, named-pipe/file failures, and all
  other output errors remain nonzero. Output writers retain their target
  identity through the type-erased execution graph so a file EPIPE cannot be
  mistaken for stdout closure.

• Report demultiplexed output topology from the effective writer graph: one
  path sink per emitted read lane, without exposing data-dependent sample
  filenames.

• Propagate ANTISEQUENCE's single-use graph lifecycle and fallible finalization:
  malformed input, output flush/footer failures, and repeated execution now
  produce typed nonzero errors instead of panic, silent truncation, or false
  success.

• Fix mixed-length Hamming seed planning so a fast-path seed is used only when
  it is guaranteed for every literal; this removes a silent false-negative
  case while retaining safe indexed matching.

• Make seqproc's executable default architecture-tuned while preserving
  ANTISEQUENCE's library-safe baseline: distributed x86_64 binaries target
  x86-64-v3/AVX2, aarch64 artifacts use fixed platform targets, and local
  repository builds use target-cpu=native.

• Add exact target-feature CPUID/XGETBV compatibility checks, Linux ELF loader
  ISA notes, --version --verbose build provenance, and build/SIMD provenance
  in summary schema 1.13.0. Release CI inspects the packaged cargo-dist binary
  before hosting it.

• Add comprehensive byte-equivalence gates between generic SSE2 and tuned
  AVX2 builds.

• EFGDL 2 document headers, named resources, fixed output sequences, output
  header templates, indexed captures, layout choice/optional/repeat algebra,
  anchor sets, and explicit ambiguity/position policies.

• One to three separate input lanes, ordered shard lists, stdin/stdout,
  interleaved FASTQ, gzip auto-detection, and optional accelerated gzip input.

• Typed RunConfig, RunReport, and SeqprocError APIs plus run, validate,
  and explain CLI subcommands; legacy flag-only invocation remains available
  for one compatibility cycle.

• Corrected SPLiT-seq FILTER/Hamming behavior, normalized duplicate whitelist
  entries, deterministic ambiguity handling, and exhaustive input validation.

• Worker-local statistics, versioned run summaries, proof-gated graph
  optimization, dynamic batch planning, and optimized low-thread execution.

• Reproducible multi-platform binary release automation with explicit CPU
  floors.

Install seqproc 0.1.0

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/seqproc/releases/download/v0.1.0/seqproc-installer.sh | sh

Download seqproc 0.1.0

File	Platform	Checksum
seqproc-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
seqproc-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
seqproc-aarch64-unknown-linux-gnu.tar.xz	ARM64 Linux	checksum
seqproc-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum