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v1.4.0

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@katosh katosh released this 08 Apr 18:12
  • Made pygam an optional dependency that can be installed with pip install palantir[gam] or pip install palantir[full]
  • Added proper conditional imports and improved error handling for pygam
  • Enhanced run_magic_imputation to return appropriate data types for different inputs
  • Updated code to use direct AnnData imports for newer compatibility
  • Improved version detection using importlib.metadata with graceful fallbacks
  • Fixed Series indexing deprecation warnings in early cell detection functions
  • Expanded and standardized documentation with NumPy-style docstrings throughout the codebase
  • Added comprehensive type hints to improve code quality and IDE support
  • Remove dependency from _ methods in scanpy for plotting.
  • add pseudotime_interval argument to control path length in palantir.plot.plot_trajectory