v2.1.0

What's Changed

The app has been changed to render it compatible with the Dias pipeline.

In the script.sh:

• Introduced an optional minimum quality filter.
• Introduced filtering by chromosomes, after chr prefix is checked to ensure compatibility between chr1 and 1 formats.
• App compresses and tabix-indexes the VCF and gVCF if not already in .gz format.
• App tries FORMAT/DP and then INFO/DP to ensure robustness for gVCF.

In the baf_depth_plotting.R script

• read_to_df() and calculate_baf() are separated to improve modularity and clarity.
• The script no longer calculates BAFs for the gVCF input.
• Checks for file existence and empty files.

New Contributors

• @raymondmiles made their first contribution in #26

Full Changelog: v2.0.1...v2.1.0