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This pull request updates the io.github.pemsley.coot.yaml file to improve module configuration and ensure compatibility with newer versions of dependencies. The changes primarily involve updating build options and source references.

Updates to module configuration:

  • Changed the USE_PYTHON flag from 1 to ON in the gemmi module to align with standard CMake conventions. ([io.github.pemsley.coot.yamlL52-R59](https://github.com/eunos-1128/io.github.pemsley.coot/pull/9/files#diff-55b9e84a877dbbef6cbca71f44f2c253217232100c0d81f840e1abf5346b24efL52-R59))

Updates to source references:

  • Updated the gemmi module's source tag from v0.7.1 to v0.7.3 to use the latest version. ([io.github.pemsley.coot.yamlL52-R59](https://github.com/eunos-1128/io.github.pemsley.coot/pull/9/files#diff-55b9e84a877dbbef6cbca71f44f2c253217232100c0d81f840e1abf5346b24efL52-R59))
  • Changed the coot module's source reference from a specific commit (a374e0364bbe7b9eb06b5c8302db38d24ae02007) to a release tag (Release-1.1.18) for better version tracking. ([io.github.pemsley.coot.yamlL357-R357](https://github.com/eunos-1128/io.github.pemsley.coot/pull/9/files#diff-55b9e84a877dbbef6cbca71f44f2c253217232100c0d81f840e1abf5346b24efL357-R357))

@eunos-1128 eunos-1128 self-assigned this Aug 3, 2025
@eunos-1128 eunos-1128 merged commit 5d0f39f into alpha Aug 3, 2025
eunos-1128 added a commit that referenced this pull request Aug 3, 2025
eunos-1128 added a commit that referenced this pull request Oct 11, 2025
* Update io.github.pemsley.coot.yaml

- Replaced `--filesystem=home` with `--filesystem=host`
- Added `--filesystem=xdg-cache` and `--filesystem=xdg-data`

* gemmi: Bump to v0.7.3

* coot: Bump to Release-1.1.18

* Revert filesystem permissions

* Bump to Release-1.1.18 (#8) (#9)

* Bump to Release-1.1.18 (#8) (flathub#96)

* Bump to Release-1.1.18 (flathub#94)

* Bump to `6629ed9` (#10)

* Bump to `6629ed9` (flathub#97)

* Update README.md

* Update README.md

* Rename module 'clipper4coot' to 'clipper'

* Remove redundant directory creation and add new command for monomers data

* Replace directory creation with sed command to update Makefile.am for monomers data

* Update sed command to correctly append monomers data in Makefile.am

* Update Makefile.am to include 'monomers' directory; refactor patch command

* Refactor patch file paths in the manifest

* Bump to Release-1.1.19 (#12)
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2 participants