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This pull request updates the source configuration for the coot module to use a tagged release instead of a specific commit and removes a patch that was previously applied. This simplifies dependency management and ensures the module tracks official releases.

Dependency management updates:

  • Updated the coot source in io.github.pemsley.coot.yaml to use the Release-1.1.19 tag instead of a specific commit, aligning with official release tracking.
  • Removed the application of the patches/Makefile.am.patch file, as it is no longer necessary with the new release tag.

@eunos-1128 eunos-1128 self-assigned this Oct 9, 2025
@eunos-1128 eunos-1128 merged commit 67b03e0 into alpha Oct 9, 2025
@eunos-1128 eunos-1128 deleted the beta branch October 9, 2025 02:39
eunos-1128 added a commit that referenced this pull request Oct 11, 2025
* Update io.github.pemsley.coot.yaml

- Replaced `--filesystem=home` with `--filesystem=host`
- Added `--filesystem=xdg-cache` and `--filesystem=xdg-data`

* gemmi: Bump to v0.7.3

* coot: Bump to Release-1.1.18

* Revert filesystem permissions

* Bump to Release-1.1.18 (#8) (#9)

* Bump to Release-1.1.18 (#8) (flathub#96)

* Bump to Release-1.1.18 (flathub#94)

* Bump to `6629ed9` (#10)

* Bump to `6629ed9` (flathub#97)

* Update README.md

* Update README.md

* Rename module 'clipper4coot' to 'clipper'

* Remove redundant directory creation and add new command for monomers data

* Replace directory creation with sed command to update Makefile.am for monomers data

* Update sed command to correctly append monomers data in Makefile.am

* Update Makefile.am to include 'monomers' directory; refactor patch command

* Refactor patch file paths in the manifest

* Bump to Release-1.1.19 (#12)
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2 participants