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@fernandoPalluzzi fernandoPalluzzi released this 23 Mar 09:04
v1.1.0
9649b3b
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Learn about vigilant mode.

New stable release of the CRAN package SEMgraph.
News:

  • Added new arguments for SEMdag() function: LO = "TO" or "TD" for knowledge-based
    topological order or data-driven top-down order, and penalty = TRUE or FALSE,
    separate penalty factors can be applied to each coefficient
  • Deprecated extendGraph() in favor of new resizeGraph() function, that
    re-sized graph, removing edges or adding edges/nodes if they are present
    or absent in a given reference network
  • Change modelSerch(), interactive procedure is out, and now a three step
    procedure is implemented for search strategies with new SEMdag() and resizeGraph
    functions
  • Change SEMgsa() deleting D,A,E p-values with more performing activation and
    inhibition pvalues
  • Added argument MCX2 = TRUE or FALSE for Shipley.test() function, a Monte Carlo
    P-value of the combined C test
  • Added new SEMdci() function for differentially connected genes inference
  • Change properties(), now extracted components are order by component sizes
  • Change argument q = q-quantile with q = 1-top/vcount(graph) in activeModule()
    function, now the induced graph for the "rwr" and "hdi" algorithms is defined
    by the top-n ranking nodes.
  • Various fixed bugs
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