rgm 1.2.1

CRAN-pretest follow-up to 1.2.0:

• DESCRIPTION now references the published JABES 2026 article via its journal DOI (<doi:10.1007/s13253-024-00638-6>) instead of the arXiv preprint, per CRAN policy on e-print references.
• Removed "state-of-the-art" promotional language from the Description.
• Citation year corrected to 2026 (the JABES issue date) throughout README, NEWS, and cran-comments.

Reference

Vinciotti, V., Wit, E. C., & Richter, F. (2026). Random Graphical Model of Microbiome Interactions in Related Environments. JABES, 31(1), 46–59. https://doi.org/10.1007/s13253-024-00638-6

rgm 1.2.0

First release after the 2026-02-01 CRAN archival. Same content as the unreleased 1.1.0 — version bumped to 1.2.0 to make the size of the change explicit.

Major changes

• Drops the huge dependency (the reason rgm was archived). Default initial graph is now empty; pass initial.graphs = to keep a warm start of your own.
• New exported function post_processing_rgm() returning ggplot diagnostics.
• CI rewritten to a working multi-platform R-CMD-check matrix; all green with --as-cran.

Minor

• mvtnorm added to Imports. Removed an in-file rmvnorm() shadowing the import.
• R/imports.R anchored with "_PACKAGE" so roxygen now emits the importFrom() lines.
• src/test.cpp (template scaffolding) removed; RcppExports regenerated.
• Build artifacts (*.o, *.so, .DS_Store) untracked.
• README rewritten with JABES 2024 reference and a runnable quick-start.

Reference

Vinciotti, V., Wit, E. C., & Richter, F. (2024). Random Graphical Model of Microbiome Interactions in Related Environments. JABES, 31(1), 46–59. https://doi.org/10.1007/s13253-024-00638-6

rgm 1.1.0

Major changes

• Drops the huge dependency (this version restores CRAN-eligibility after the 2026-02-01 archive). The default initial graph in rgm() is now empty; pass initial.graphs = to keep a graphical-lasso warm start of your own.
• New exported function post_processing_rgm() returning ggplot diagnostic plots (probit recovery, alpha estimation, posterior density of beta, beta convergence, ROC, edge probability heatmap).

Minor

• Adds mvtnorm to Imports. Removes an in-file rmvnorm() definition in R/sim.rgm.R that was unintentionally shadowing the imported one.
• Anchors R/imports.R @importFrom tags with a "_PACKAGE" block so roxygen now actually emits the corresponding importFrom() lines into NAMESPACE (previously silently ignored).
• Removes the unused C++ template (src/test.cpp); regenerates RcppExports.{R,cpp} via Rcpp::compileAttributes().
• .DS_Store, *.o, *.so removed from version control; added to .gitignore / .Rbuildignore.

CRAN status

R CMD check --as-cran is clean (0 errors, 0 warnings, the only NOTEs are the expected post-archive-resubmission note and a local-tidy HTML artifact). Source tarball: rgm_1.1.0.tar.gz.

Reference

Vinciotti, V., Wit, E. C., & Richter, F. (2024). Random Graphical Model of Microbiome Interactions in Related Environments. JABES, 31(1), 46–59. https://doi.org/10.1007/s13253-024-00638-6

rgm 1.0.1

• First release
• Include simulation function sim.rgm
• Include estimation function rgm
• Include post-processing functions