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rgm 1.1.0

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@franciscorichter franciscorichter released this 04 May 11:43
· 4 commits to main since this release
v1.1.0
7c3e99a

Major changes

  • Drops the huge dependency (this version restores CRAN-eligibility after the 2026-02-01 archive). The default initial graph in rgm() is now empty; pass initial.graphs = to keep a graphical-lasso warm start of your own.
  • New exported function post_processing_rgm() returning ggplot diagnostic plots (probit recovery, alpha estimation, posterior density of beta, beta convergence, ROC, edge probability heatmap).

Minor

  • Adds mvtnorm to Imports. Removes an in-file rmvnorm() definition in R/sim.rgm.R that was unintentionally shadowing the imported one.
  • Anchors R/imports.R @importFrom tags with a "_PACKAGE" block so roxygen now actually emits the corresponding importFrom() lines into NAMESPACE (previously silently ignored).
  • Removes the unused C++ template (src/test.cpp); regenerates RcppExports.{R,cpp} via Rcpp::compileAttributes().
  • .DS_Store, *.o, *.so removed from version control; added to .gitignore / .Rbuildignore.

CRAN status

R CMD check --as-cran is clean (0 errors, 0 warnings, the only NOTEs are the expected post-archive-resubmission note and a local-tidy HTML artifact). Source tarball: rgm_1.1.0.tar.gz.

Reference

Vinciotti, V., Wit, E. C., & Richter, F. (2024). Random Graphical Model of Microbiome Interactions in Related Environments. JABES, 31(1), 46–59. https://doi.org/10.1007/s13253-024-00638-6

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