Skip to content
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions gcp_variant_transforms/vcf_to_bq.py
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,7 @@
import datetime
import enum
import logging
import sys
import tempfile

import apache_beam as beam
Expand Down Expand Up @@ -209,6 +210,7 @@ def _validate_args(options, parsed_args):

def run(argv=None):
"""Runs VCF to BigQuery pipeline."""
logging.info('Command: %s', ' '.join(argv or sys.argv))
parser = argparse.ArgumentParser()
parser.register('type', 'bool', lambda v: v.lower() == 'true')
command_line_options = [option() for option in _COMMAND_LINE_OPTIONS]
Expand Down