INDRA v1.12.0

Input processors

• New input API and processor for HPRD in indra.sources.hprd to access
  http://www.hprd.org/
• New input API and processor for TRRUST in indra.sources.trrust to access
  https://www.grnpedia.org/trrust/
• Major overhaul and improvement of MedScan API and processor in
  indra.sources.medscan
• Extensions and improvements in RLIMS-P processor including capability to
  process dumped result files in indra.sources.rlimsp
• Fixes to adapt to latest SIGNOR content in indra.sources.signor
• New API endpoint to process Causal Biological Networks from http://causalbionet.com in indra.sources.bel

Database clients

• New resources and functions to map ChEBI names to and from IDs in indra.databases.chebi_client
• New resources and functions to map MeSH names to and from IDs in indra.databases.mesh_client

Model analysis

• Bug fixes and improvements in indra.explanation.model_checker

General

• Optimized pickle protocols used to exploit Python 3+ compatibility