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v0.2.0: Merge pull request #4 from harmsm/main

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@harmsm harmsm released this 27 Nov 01:38
· 461 commits to main since this release
6b98164

Code now does:

  • Simulation of experiments
  • Processing raw reads (fastq through ln_cfu/condition)
  • Independent modeling (extract that for each genotype independently)
  • Hierarchical modeling (Bayesian analysis of theta together)
  • Epistasis analysis
  • Epistasis vs. [titrant] categorization analysis
  • Various helpful plotting utilities.

Additionally, the API is now (roughly) stable. I antiquate no major changes to the simulation, raw-processing, or independent modeling code base. I expect to build out the hierarchical modeling codebase and clean up the utilities functions. None of these will be architectural changes, however, just minor refactors.