v1.0.0

Initial release of the SINGLE-MSI pipeline. This first release is primarily to associate a DOI with the pipeline. Future development goals are as follows:

1.) Create separate files for each rule to help users incorporate multi-threading and custom filter/cluster settings

2.) Combine FASTQ/MTX file workflows with automatic file detection

3.) Include small reference transcriptome to verify installation of FASTQ Snake file

4.) Containerize workflow to optionally not install each software