amber v4.3
·
230 commits
to master
since this release
Functional:
- filter out sites with >= 15% reads with low base or map qual
- base qual threshold 30 -> 13
- new panel contamination model
Technical:
- used updated segmentation
- added specific regions config
- no contamination VCF file output
Bugs:
- apply tumor filter to sites used in contamination
- add sequencing type to config, use to identify Ultima low-qual read indices