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orange v5.0

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@hmftools-release-bot hmftools-release-bot released this 08 Jun 21:29
· 230 commits to master since this release

Functional:

  • hide immune section
  • removed germline to somatic logic
  • removed SV percentiles
  • only include events linked to driver events for all Linx and Purple output
  • removed purple and linx suspect events
  • show driver candidates in grey

Technical:

  • show cancer type as 'NOT SPECIFIED' if missing from config
  • add Sage variant plots to JSON

Config:

  • remove: alt_sj_cohort_file
  • remove: gene_distribution_file
  • remove: cohort_percentiles_tsv
  • removed use of Ensembl data cache
  • added sequencing type
  • remove signatures etiology
  • remove driver gene panel