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Dev Merge#13

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jkobject merged 33 commits intomainfrom
dev
Jan 9, 2025
Merged

Dev Merge#13
jkobject merged 33 commits intomainfrom
dev

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@jkobject
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@jkobject jkobject commented Jan 8, 2025

  • updating version of packages
  • better version display
  • better default parameters
  • allowing for meta cells using nearest neighbors
  • creating an age group dictionary and label across human and mouse species
  • better param names
  • big debug in sampling cells
  • allowing sampling with replacement
  • big debug in resuming a job multiple times with pytorch lightning and seeds

…,now working with depth in weighted random sampling
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codecov-commenter commented Jan 8, 2025

⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

❌ Patch coverage is 51.70648% with 283 lines in your changes missing coverage. Please review.
✅ Project coverage is 51.11%. Comparing base (e9f25e2) to head (5fb8821).
⚠️ Report is 173 commits behind head on main.

Files with missing lines Patch % Lines
scdataloader/mapped.py 44.92% 217 Missing ⚠️
scdataloader/preprocess.py 69.81% 32 Missing ⚠️
scdataloader/utils.py 42.85% 12 Missing ⚠️
scdataloader/datamodule.py 77.14% 8 Missing ⚠️
scdataloader/collator.py 0.00% 6 Missing ⚠️
scdataloader/data.py 70.00% 6 Missing ⚠️
scdataloader/__main__.py 0.00% 2 Missing ⚠️
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #13      +/-   ##
==========================================
- Coverage   52.52%   51.11%   -1.42%     
==========================================
  Files           9       10       +1     
  Lines        1068     1567     +499     
==========================================
+ Hits          561      801     +240     
- Misses        507      766     +259     

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Comment thread scdataloader/utils.py
@@ -147,7 +147,7 @@ def getBiomartTable(
return res

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Is it possible that somehow between 0.77.2 and 0.77.3 some bulk population of ontologies changed @sunnyosun or @Zethson?

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Resolved via Slack.

@jkobject jkobject merged commit 869fa59 into main Jan 9, 2025
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3 participants