Conda environment on Iris

Shared conda environment is available at /usersoftware/chanj3. Currently available environments include:

• nextflow: nf-core documentation
• xenium: 10x documentation
• sopa: sopa documentation

Activate the environment

module load anaconda
conda activate /usersoftware/chanj3/<env_name>

Create an environment

conda create --prefix /usersoftware/chanj3/<env_name>

Register the python kernel to Jupyter

conda install ipykernel
python -m ipykernel install --user --name "<name>" --display-name "<Display Name>"