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v0.1.6

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@pkharchenko pkharchenko released this 05 Jul 20:58
· 65 commits to main since this release
v0.1.6
98444e8

Breaking (install requirements): the Python package now uses the zarr-python 3 library and requires zarr>=3.1 and Python ≥3.11 (drops 3.8–3.10). The on-disk format is unchanged (Zarr v2) — stores written by 0.1.6 stay readable by zarr-python 2 and by the C++/R/JS surfaces; zarr-python 3 is the library dependency, not a format change.

Fixes

  • Dense primary measure now handled by the viewer prep and the live viewer (e.g. an SCE logcounts assay or a scaled/dense AnnData X) — previously raised NotFoundError and viewer optimization was silently skipped.
  • Consolidated .zmetadata is emitted in parent-before-child key order (and read tolerantly of any order), so JS-extended stores open cleanly under zarr-python 3.
  • Seurat → extend_for_viewer: a boolean QC column is no longer mistaken for a grouping, and the active identity no longer duplicates the clustering it mirrors.

Internal

  • Single-sourced the JS viewer-compute recipe (compute.ts) and the measure-as-CSC read (fieldAsCsc); DRY'd the Python densify idiom (as_csc/as_csr). Behavior-preserving; cross-surface conformance green.
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