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PANORAMA 1.0.4

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@jpjarnoux jpjarnoux released this 23 Jul 13:28
· 2 commits to main since this release
Immutable release. Only release title and notes can be modified.
1.0.4
22b1dca
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Learn about vigilant mode.

New feature

  • Add "How to cite" guide (PR: #55)
  • Add pull request template for contributions (PR: #51)

Minor Change

  • Large documentation restructuring: developer guide, API reference, and user guide fixes (PR: #57)
  • Remove support for --conserved_spots in write_flat.py (PR: #56)
  • Remove the automatic version bump GitHub Actions workflow (PR: #52)

Bug fixes

  • Fix annotation monitoring accumulating elapsed time across pangenomes instead of per pangenome (PR: #48)
  • Fix CI error (PR: #49)
  • Fix relative path management to find pangenome.h5 file (PR: #54)
  • Add resolve_path utility for more robust pangenome path resolution
  • Fix wrong argument name in compare_spots/compare_systems commands
  • Update minimum pyhmmer version to 0.12.0 for compatibility with its bytes/str API change (PR: #58)

Contributor

@jpjarnoux
@JeanMainguy
@dvallenet

Full Changelog: 1.0.0...1.0.4

Contributors

dvallenet, JeanMainguy, and jpjarnoux
Assets 3
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