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v11.14.0

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@pkalita-lbl pkalita-lbl released this 08 Dec 16:52
· 553 commits to main since this release
41b7734

What's Changed

  • Update makefile to use pytest so test_nmdc_schema_validation_plugin is used by @samobermiller in #2709
  • Add storage_units annotations for 7 slots reviewed in PR #2653 by @turbomam in #2689
  • Fix bug where link checker GHA workflow failed to install Python dependencies by @eecavanna in #2708
  • Update submission status enum to reflect applied functionality by @samobermiller in #2720
  • 2710 add slot to biosample to track metadata origin by @aclum in #2711
  • Start improving slots that had units excuses by @turbomam in #2690
  • Remove note on biosample definitions in core.yaml by @aclum in #2722
  • Clean up commented status values in StatusEnum by @aclum in #2721
  • Add LinkML metamodel validation to build process by @turbomam in #2727
  • Update to latest linkml 1.9.6 and linkml-runtime 1.9.5 by @turbomam in #2732
  • Add LinkML linting for source schema modules by @turbomam in #2734
  • Modeling updates to ecosystem_path_id by @aclum in #2723
  • Add editor and office temporary files to .gitignore by @turbomam in #2741
  • Quote ecosystem_path_id example value as string by @turbomam in #2746
  • Add check-dependencies to make test target by @turbomam in #2743
  • 2747 gh actions cleanup by @turbomam in #2748
  • GitHub Actions cleanup and documentation workflow optimization by @turbomam in #2752
  • Add test to prevent new units_alignment_excuse annotations by @turbomam in #2753
  • Test docs generation with test_slot_delete_me by @turbomam in #2755
  • Remove test_slot_delete_me (docs test complete) by @turbomam in #2756
  • Separate deptry from make test, break out CI steps by @turbomam in #2757
  • Remove gen-linkml-schema-files target (redundant with linting) by @turbomam in #2759
  • 2716 remove cli aliases for scripts not in package by @turbomam in #2763
  • Fix ncbi_nmdc_exact_term_matching.py: replace OmicsProcessing with DataGeneration by @turbomam in #2765
  • Fix ncbi_nmdc_exact_term_matching.py: replace OmicsProcessing with DataGeneration by @turbomam in #2767
  • Update urllib3 to 2.6.0 (security fix) by @turbomam in #2770

Full Changelog: v11.13.0...v11.14.0