v11.14.0
What's Changed
- Update makefile to use pytest so test_nmdc_schema_validation_plugin is used by @samobermiller in #2709
- Add storage_units annotations for 7 slots reviewed in PR #2653 by @turbomam in #2689
- Fix bug where link checker GHA workflow failed to install Python dependencies by @eecavanna in #2708
- Update submission status enum to reflect applied functionality by @samobermiller in #2720
- 2710 add slot to biosample to track metadata origin by @aclum in #2711
- Start improving slots that had units excuses by @turbomam in #2690
- Remove note on biosample definitions in core.yaml by @aclum in #2722
- Clean up commented status values in StatusEnum by @aclum in #2721
- Add LinkML metamodel validation to build process by @turbomam in #2727
- Update to latest linkml 1.9.6 and linkml-runtime 1.9.5 by @turbomam in #2732
- Add LinkML linting for source schema modules by @turbomam in #2734
- Modeling updates to ecosystem_path_id by @aclum in #2723
- Add editor and office temporary files to .gitignore by @turbomam in #2741
- Quote ecosystem_path_id example value as string by @turbomam in #2746
- Add check-dependencies to make test target by @turbomam in #2743
- 2747 gh actions cleanup by @turbomam in #2748
- GitHub Actions cleanup and documentation workflow optimization by @turbomam in #2752
- Add test to prevent new units_alignment_excuse annotations by @turbomam in #2753
- Test docs generation with test_slot_delete_me by @turbomam in #2755
- Remove test_slot_delete_me (docs test complete) by @turbomam in #2756
- Separate deptry from make test, break out CI steps by @turbomam in #2757
- Remove gen-linkml-schema-files target (redundant with linting) by @turbomam in #2759
- 2716 remove cli aliases for scripts not in package by @turbomam in #2763
- Fix ncbi_nmdc_exact_term_matching.py: replace OmicsProcessing with DataGeneration by @turbomam in #2765
- Fix ncbi_nmdc_exact_term_matching.py: replace OmicsProcessing with DataGeneration by @turbomam in #2767
- Update urllib3 to 2.6.0 (security fix) by @turbomam in #2770
Full Changelog: v11.13.0...v11.14.0