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This is my list of curated gene sets. Feel free to use it, expand it and share it.

I use the yaml R package to deal with yaml files. They are convenient because they let me add comments next to each gene, and nest them in a hierarchy.

Let me know if you think this is useful. I'm considering implementing a simple webapp to access this kind of content. You can contact me at nacho@bu.edu

My current gene sets include:

  • Immune Transcription Factors
  • Sterol Synthesis genes
  • Housekeeping genes
  • Complement genes
  • Macrophage Receptors
  • Lysosome genes
  • Interferon Stimulated Genes
  • Apoptosis genes
  • Heat Shock Proteins
  • Translation genes
  • Immunity genes
  • Vesicular Transport genes
  • Bile Acid Metabolism genes
  • Cytokines
  • Neutrophil genes
  • Coagulation genes
  • Acute Phase genes
  • Platelet genes
  • Il6 Signaling genes
  • Natural Killer Cell Signaling
  • B Cell Receptor Signaling
  • T Helper Cell Differentiation
  • T Cell Receptor Signaling

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A curated compilation of immune system genes grouped by function

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