This is my list of curated gene sets. Feel free to use it, expand it and share it.
I use the yaml R package to deal with yaml files. They are convenient because they let me add comments next to each gene, and nest them in a hierarchy.
Let me know if you think this is useful. I'm considering implementing a simple webapp to access this kind of content. You can contact me at nacho@bu.edu
My current gene sets include:
- Immune Transcription Factors
- Sterol Synthesis genes
- Housekeeping genes
- Complement genes
- Macrophage Receptors
- Lysosome genes
- Interferon Stimulated Genes
- Apoptosis genes
- Heat Shock Proteins
- Translation genes
- Immunity genes
- Vesicular Transport genes
- Bile Acid Metabolism genes
- Cytokines
- Neutrophil genes
- Coagulation genes
- Acute Phase genes
- Platelet genes
- Il6 Signaling genes
- Natural Killer Cell Signaling
- B Cell Receptor Signaling
- T Helper Cell Differentiation
- T Cell Receptor Signaling