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v0.10.0

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@cjw85 cjw85 released this 10 Oct 16:34

Feature release

  • Switched variant calling to an explicitly diploid calling model.
  • Added a -f force overwrite option to medaka_consenses.
  • Refreshed E. coli benchmark to include effect of racon.
  • Refreshed variant calling benchmarks.
  • Added C. elegans assembly benchmarks to documentation.
  • Fixed bug causing larger than requested overlap in inference chunks.
  • Corrected parsing of region strings with multiple : charaters
  • Fixed rare consensus stitching error.

Please do not attempt to use the "Source code" assets attached below for running medaka, they do not include medaka's model files.