What's Changed

0.2.0 - New data dictionary output, Refactor of Vuex store, and Expansion of Cypress testing coverage

Overview

Annotation tool now outputs a modified BIDS data dictionary that includes Neurobagel annotations section per participants.tsv column (In versions 0.1.x, a fully transformed version of participants.tsv was outputted. See the description of 0.1.x below for more details.)
Assessment tool categorization is temporarily removed until new version of assessment tool annotation is added
Continuous value columns now can be annotated with the following transformation heuristics: bounded value, european decimal value, float value, and integer value
Categorical value columns (currently Diagnosis and Sex) can now be annotated with a set of labels via Snomed and BIDS controlled vocabularies (see categoricalOptions in store/index.js)
Vuex store has been refactored to accommodate all of the changes for this release
Testing coverage has greatly increased. e2e and page-level tests have been refactored for the changes in this release, and there are now unit tests for all getters, mutations, and actions in the Vuex store
Though the annotation tool's output is still accessible via the Download page, preview of the file's contents has been removed. (This will be implemented for the new data dictionary in an upcoming release.
Updated figures, descriptions, install/deployment, and page instructions in README.md

Contributors

@jarmoza made their first contribution in #5
@surchs made their first contribution in #27
@rmanaem made their first contribution in #241
@alyssadai made their first contribution in #279
@yarikoptic made their first contribution in #410
@Remi-Gau made their first contribution in #417
@dependabot made their first contribution in #418

Changes

Removal of nextPageAccessible getter by @jarmoza in #258
Create LICENSE by @alyssadai in #279
Implemented mutation to change column to category mapping by @rmanaem in #283
Implement getCategories store getter by @surchs in #284
Implement getColumnDescription getter by @surchs in #289
Implement value description getter by @surchs in #290
createColumnToCategoryMap mutation + required getter + test by @jarmoza in #291
Implemented getColumnNames getter by @rmanaem in #292
setCurrentPage mutation + unit test for store refactor by @jarmoza in #296
Implementation of nextPage getter for refactor + unit test by @jarmoza in #297
index page refactor by @surchs in #302
Implementation of isPageAccessible getter for refactor by @jarmoza in #299
action to process a new dataTable by @surchs in #303
Data dictionary refactor for Store refactor + Tests by @jarmoza in #312
Update to Vuex syntax for getters and unit tests by @jarmoza in #321
Components and their tests are nominally refactored for store by @jarmoza in #323
Mutations should have a single payload parameter by @jarmoza in #325
Swapping in refactored store by @jarmoza in #326
Basic app launch post-refactor by @jarmoza in #327
Navbar/next page button/page accessibility update for refactor by @jarmoza in #328
Updates to Index page for data table + data dictionary for store refactor by @jarmoza in #329
Adjusting e2e tests + support code for Phase 1 store refactor by @jarmoza in #330
Build static by @surchs in #335
New mutation setHeuristic for phase 2 store refactor by @jarmoza in #337
New 'getHeuristic' getter for phase 2 store refactor by @jarmoza in #342
Only run index & categ e2e tests for now by @jarmoza in #343
Refactor getter 'getAnnotationComponent' by @jarmoza in #345
getMappedColumns Getter for Phase 2 Store Refactor by @jarmoza in #349
New getter for category explanation text for the phase 2 store refactor by @jarmoza in #351
getOptions getter for Phase 2 store refactor by @jarmoza in #353
Add node v16 dependency info by @surchs in #356
Getter getMissingValues for Phase 2 Store Refactor by @jarmoza in #355
Missing values table items refactor + component test fix by @jarmoza in #357
mutation 'changeMissingStatus' for Phase 2 Store Refactor by @jarmoza in #359
Added and configured lint staged and lint workflow by @rmanaem in #362
Added and configured cd workflow by @rmanaem in #361
getUniqueValues getter for Phase 2 Store Refactor by @jarmoza in #363
changeMissingStatus getter Fix + Check for Unique Values by @jarmoza in #365
selectCategoricalOption mutation for Phase 2 Store Refactor by @jarmoza in #366
e2e node version update by @jarmoza in #370
getHarmonizedPreview getter for Phase 2 Refactor by @jarmoza in #368
Feature for Phase 2 Refactor: Transform Heuristics for continuous values are now selectable by column by @jarmoza in #372
Refactor: handle controlled terms as objects by @surchs in #374
Phase 2 Store Refactor - Integration Part 1 - Annotation page access, tabs refactor, column-category unlinking by @jarmoza in #375
Phase 2 refactor: New getter getSelectedCategoricalOption by @jarmoza in #378
Phase 2 refactor: Column linking/unlinking alters data dictionary by @jarmoza in #379
Replace remaining getSelectedOption instances and fix optional chaining bug with new getter by @jarmoza in #380
Phase 2 Refactor: Missing values functionality + integration with Annotation page by @jarmoza in #382
Old tool group component removal, old store removal, and store field rename by @jarmoza in #383
Implemented updateAnnotationCount mutation by @rmanaem in #389
Capitalized references of description in store and updated affected unit tests by @rmanaem in #391
Fixed the bug that made download page unreachable from annotation page by @rmanaem in #396
Bumped cypress version to 12.9.0 by @rmanaem in #397
Categorical Select bugfix + Rework of initialization of data dictionary columns for data types by @jarmoza in #395
Removed range and string options from transformationHeuristics by @rmanaem in #401
Refactored download button by @rmanaem in #404
Removal of old download components and related functionality by @jarmoza in #409
Refactored e2e tests by @rmanaem in #405
codespell: workflow, config, typos fixed by @yarikoptic in #410
[INFRA] add dependabot by @Remi-Gau in #417
Next page button component tests - Clean branch by @jarmoza in #414
[ENH] Updated Diagnosis options by @rmanaem in #428
Getter for json output for discrete (categorical) value columns ...