Release detaxizer 1.4.0 - wegbutza · nf-core/detaxizer

PR #103 - Template update for nf-core/tools 4.1.0 (from 3.4.1), for details read the nf-core/tools 4.1.0 release notes (by @d4straub)
PR #104 - Migrated local modules to Nextflow topic channels for software version collection and updated nf-core modules to latest versions (by @d4straub)
PR #108 - nf-core/mag samplesheets now include group=0 and short_reads_platform/long_reads_platform columns required by mag 5.x, and keep long-read-only samples (reported by @vagkaratzas, fix by @d4straub)
PR #110 - Formatting changes, apptainer efficiency increase and AWS full-test launch config with nf-schema pinned to 2.7.2 (by @d4straub)
PR #111 - Documentation and schema corrections: fixed published file names and paths in the output documentation, repaired usage documentation and README prose, clarified schema descriptions and replaced the unused Biopython citation with pandas and numpy (by @d4straub)

PR #107 - Paired-end seqkit filtering with --validation_blastn now removes reads flagged in either mate, previously one mate's ids were applied to both (reported by @vagkaratzas, fix by @d4straub)
PR #111 - kraken2preparation extracts the tar version portably; parse_kraken2report skips blank lines and validates the field count, and the summarizer fails clearly on empty input; generate_downstream_samplesheets had an emit block added (by @d4straub)
PR #114 - Fixed --filtering_tool bbmap with --validation_blastn: flagged reads were not removed from single-end and long-read samples, and paired-end pairs flagged only in the second mate were kept. The id files are now passed comma-separated with /2 ids normalized to /1, and BBMap is cited when used for filtering (reported by @erikrikarddaniel, fix by @d4straub)
PR #115 - With --filtering_tool bbmap more second-mate read names are supported (/2, .2 and the CASAVA 1.8+ mate field). Read names ending in .2 keep their original form in the filter list, because a first-mate name can also end in .2. The bbmap/filterbyname module takes the id files as a path input, which needs an upstream module change (reported by @Vicbeg, fix by @d4straub)
PR #116 - Launch the AWS tests with seqeralabs/action-seqera-launch and the v2 syntax parser, and stop uploading the debug log as an artifact, as in nf-core/ampliseq#1136 (inspired by @erikrikarddaniel, by @d4straub)

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