nf-core/magmap v1.3.0

What's Changed

• Add proteins/magmap.proteins.faa.gz, a protein FASTA of all selected genomes
• Add Unassigned_NoFeatures/Unassigned_Ambiguity columns to overall_stats.tsv.gz, and run FeatureCounts once per sample across all feature types
• Faster start-up: the NCBI assembly summaries are only downloaded when --indexes is given, and filtered in a process instead of the head process
• Trim Galore! now runs with the default process_medium resources
• Reject --genomeinfo accessions ending in a FASTA extension, and ignore FASTA extensions in --gtdbtk_metadata/--checkm_metadata identifiers
• Fix an empty methods-description bibliography in the MultiQC report and a crash on suppressed NCBI assemblies without ftp_path
• Replace the local COLLECT_STATS and COLLECT_FEATURECOUNTS modules with shared nf-core components
• Smaller, faster test suite

Thanks to @vagkaratzas, @nschan, @LouisLeNezet, @kathrynmurie and @danilodileo for substantial reviews, and to @leapicard, @dialvarezs, @Joon-Klaps, @maxulysse, @mashehu and @piplus2 for further reviews and contributions.

See CHANGELOG.md for the full changelog.