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Add gcta/makegrm module#11650

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lyh970817 wants to merge 3 commits into
nf-core:masterfrom
lyh970817:modules/gcta-makegrm-create
Open

Add gcta/makegrm module#11650
lyh970817 wants to merge 3 commits into
nf-core:masterfrom
lyh970817:modules/gcta-makegrm-create

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@lyh970817 lyh970817 commented May 15, 2026

This PR adds the gcta/makegrm module, which computes a whole GCTA genetic relationship matrix from PLINK inputs.

It is intended for workflows that need a dense GRM without the partitioned output naming used by gcta/makegrmpart.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • nf-core modules test gcta/makegrm --profile docker
  • nf-core modules test gcta/makegrm --profile singularity
  • nf-core modules test gcta/makegrm --profile conda

@lyh970817 lyh970817 force-pushed the modules/gcta-makegrm-create branch from 87b50f9 to 6ca1e01 Compare May 16, 2026 11:01
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