Created fcs subworkflow#3477
Conversation
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This is my first subworkflow, and I will likely create a bunch after that, so let me know anything that can be improved so that the next ones are 👌👌 |
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Answer to conda failure : Those tools don't have conda env, which explains the failed conda |
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Answer to docker failure : Docker works when running the test on GitPod, I don't really know why it fails here 
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suggesting @d4straub as a reviewer as you wrote both modules |
You can remove conda from the tests. Add it there: modules/.github/workflows/pytest-workflow.yml Lines 43 to 150 in a0f7be9 |
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@scorreard solve the merged conflicts with the ci file. |
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@scorreard for your docker issues, I think it's coming from something else. |
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Good catch, I opened twice the same PR... |
I was refreshing the page wondering why it was not working, and then realized that... It's ok, it's Friday! |
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PR checklist
Closes nf-core/genomeassembler issue 41nf-core/genomeassembler#41
versions.ymlfile.PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware