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Release 0.11.1

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@luispedro luispedro released this 22 Mar 05:39
v0.11.1
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luispedro Luis Pedro Coelho
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Release 0.11.1 fixes issues in 0.11.0 (which should not be used).

Release 0.11

User-visible improvements since version 0.10

  • Module samtools (version 0.1) now includes samtools_view
  • Add --verbose flag to check-install mode (ngless --check-install --verbose)
  • Add early checks for input files in more situations (#33)
  • Support compression in collect() output (#42)
  • Add smoothtrim() function

Bugfixes since version 0.10

  • Fix bug with orf_find & prots_out argument
  • Fix bug in garbage collection where intermediate files were often left on disk for far longer than necessary.
  • Fix CIGAR (#92) for select() blocks

Internal improvements since version 0.10

  • Switched to diagrams package for plotting. This should make building easier as cairo was often a complicated dependency.
  • Update to LTS-13 (GHC 8.6)
  • Update minimap2 version to 2.14
  • Call bwa/minimap2 with interleaved fastq files. This avoids calling it twice (which would mean that the indices were read twice).
  • Avoid leaving open file descriptors after FastQ encoding detection
  • Tar extraction uses much less memory now (#77)
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