Bugfix: mount nginx as /home/omero

[joshmoore]

0.2.0 (#31) works fine for user 1000 on openstack or docker-machine, but for higher users, the nginx job fails. This change corrects that.

[joshmoore]

Note: to test this, I had to be very careful about which user cloned/created/started up what where. This is the script I used:

omero@jamoore-docker:/data$ cat test.sh
REPO=${REPO:-aleksandra-tarkowska}
BRANCH=${BRANCH:-round2}
USER=${USER:-omero}

sudo mkdir $BRANCH
sudo chown -R $USER:$USER $BRANCH
cd $BRANCH
sudo -u $USER git clone git://github.com/openmicroscopy/devspace .
sudo -u $USER git remote add test git://github.com/$REPO/devspace
sudo -u $USER git fetch test
sudo -u $USER git checkout test/$BRANCH

sudo -u $USER git config user.email josh@glencoesoftware.com
sudo -u $USER git config user.name jmoore
sudo -u $USER git remote add m53 /data2/metadata53
sudo -u $USER git fetch m53
sudo -u $USER git cherry-pick d9c58d4^..a45b3f2

sudo cp -r /data/metadata52/slave/.ssh slave/
sudo cp /data/metadata52/slave/.gitconfig slave/
sudo chown $USER:$USER slave
sudo -u $USER -s
omero@jamoore-docker:/data$

[atarkowska]

I have just installed 0.2.0 devspace/master@3f62596cb6029fa522505e80441551e933fb067b (without that PR) and the only problem with web was

File "/home/omero/workspace/OMERO-web/OMERO.web/lib/python/omeroweb/webgateway/api_marshal.py", line 23, in <module>
    from omero_marshal import get_encoder
ImportError: No module named omero_marshal

I will update that to pip install omero_marshal. Assuming ome/openmicroscopy#4708 is coming in

diff --git a/home/jobs/OMERO-web/config.xml b/home/jobs/OMERO-web/config.xml
index 60f2630..0c8ad0a 100644
--- a/home/jobs/OMERO-web/config.xml
+++ b/home/jobs/OMERO-web/config.xml
@@ -58,6 +58,7 @@ source $OMERO_INSTALL/settings.env
 pip install -r $OMERO_DIST/share/web/requirements-py27-nginx.txt
 pip install "zeroc-ice>3.5,<3.7"
 pip install "django-redis-cache>=1.6.5"
+pip install "https://github.com/openmicroscopy/omero-marshal/tarball/master"

 #start-config
 $OMERO_DIST/bin/omero config set omero.web.application_server 'wsgi-tcp'

Web is now working on https://10.0.51.133/web

[atarkowska]

I deployed devspace on plane openstack purely via ansible scripts https://github.com/aleksandra-tarkowska/infrastructure/tree/devspace/openstack/examples omedev-docker.yml and devspace.yml

(venv)[omero@devspace develop]$ docker-compose --version
docker-compose version 1.7.1, build 6c29830
(venv)[omero@devspace develop]$ docker --version
Docker version 1.11.2, build b9f10c9

[joshmoore]

For comparison,

ubuntu@jamoore-docker:~$ docker --version
Docker version 1.11.0, build 4dc5990
ubuntu@jamoore-docker:~$ docker-compose --version

@aleksandra-tarkowska, if you think this is dangerous, we can close. But I spent a solid day trying to get 113 to work, and this was required. I don't know what the difference is, but I'll leave it running on 113 and we can see if any problems arise.

[atarkowska]

sorry for a slow response to that, but could you point me where exactly is m53 branch or d9c58d4^..a45b3f2?

[joshmoore]

Late October, I'll try to migrate the m52 build to use the newest devspace version to take advantage of the Bio-Formats tests. Closing this for the moment.

[atarkowska]

be aware of #55

[joshmoore]

Thanks for the heads up. It won't be for a couple of weeks, and I'll contact you before starting work.