ADRIAanalysis-v0.2.0

ADRIAanalysis ADRIAanalysis-v0.2.0

Diff since ADRIAanalysis-v0.1.0

What's Changed

• Add DHW time series complexity as third environmental summary stat by @ConnectedSystems in #1140
• ADRIAanalysis: refactor RSA to Mann-Whitney rank-based method by @ConnectedSystems in #1141
• ADRIAviz: update RSA/sensitivity viz for new API, spatial utils, tests, and docs scripts by @ConnectedSystems in #1142
• feat(sampling): stratified/matched/paired sampling for causal comparisons by @ConnectedSystems in #1150
• perf(io): switch result compressor from Zstd to Blosc+zstd by @ConnectedSystems in #1144
• feat(sampling): graph-based conditional dependency resolution by @ConnectedSystems in #1149
• feat(viz): extend RSA/outcome-map viz-checks with stratified/CDF/guided-vs-unguided comparisons by @ConnectedSystems in #1148
• feat(io): tag ResultSet inputs DataFrame columns with ptype/label metadata by @ConnectedSystems in #1146
• feat(interventions): widen reactive_absolute_threshold sampling range by @ConnectedSystems in #1145
• build: switch adria_analysis sysimage to headless Plotly, drop viz from adria_sim by @ConnectedSystems in #1147
• feat(decision): add projection_confidence factor and decision.build_decay by @ConnectedSystems in #1151
• feat(interventions): widen mc_min_iv_locations sampling range by @ConnectedSystems in #1152
• feat(metrics): add detrend option to temporal_variability by @ConnectedSystems in #1153
• feat(ADRIAanalysis): RSA auto-dispatch, stratified/counterfactual RSA, feature-set metadata by @ConnectedSystems in #1154
• feat(ADRIAviz): visualization support for stratified/CDF RSA comparisons by @ConnectedSystems in #1155
• Add per-intervention revisit cadence for location deployment by @ConnectedSystems in #1159
• Scenario assessment features: RSA improvements, revisit cadence, DHW complexity, and perf work (#1132) by @ConnectedSystems in #1160
• chore(ADRIAviz): regenerate Manifest.toml for Flatten/Serialization deps and 0.2.0 pin by @ConnectedSystems in #1164
• Load calibrated coral parameters into ReefMod and RME domains by @Zapiano in #1168

Full Changelog: ADRIA-CoralBlox-paper...ADRIAanalysis-v0.2.0

Merged pull requests:

• Add DHW time series complexity as third environmental summary stat (#1133) (@ConnectedSystems)
• Bump actions/checkout from 4 to 7 (#1134) (@dependabot[bot])
• Bump codecov/codecov-action from 6 to 7 (#1135) (@dependabot[bot])
• Improve test suite: fix syntax, gate slow MCDA validation, update manifests (#1137) (@ConnectedSystems)
• Fix CI/docs deploy: scoped tag filter and tag_prefix (#1138) (@ConnectedSystems)
• Sampling performance improvements, deploy volume M-unit scaling, and test suite improvements (#1139) (@ConnectedSystems)
• Add DHW time series complexity as third environmental summary stat (#1140) (@ConnectedSystems)
• ADRIAanalysis: refactor RSA to Mann-Whitney rank-based method (#1141) (@ConnectedSystems)
• ADRIAviz: update RSA/sensitivity viz for new API, spatial utils, tests, and docs scripts (#1142) (@ConnectedSystems)
• Add pre-commit config: auto-format with JuliaFormatter v2.5.1 (#1143) (@ConnectedSystems)
• perf(io): switch result compressor from Zstd to Blosc+zstd (#1144) (@ConnectedSystems)
• feat(interventions): widen reactive_absolute_threshold sampling range (#1145) (@ConnectedSystems)
• feat(io): tag ResultSet inputs DataFrame columns with ptype/label metadata (#1146) (@ConnectedSystems)
• build: switch adria_analysis sysimage to headless Plotly, drop viz from adria_sim (#1147) (@ConnectedSystems)
• feat(viz): extend RSA/outcome-map viz-checks with stratified/CDF/guided-vs-unguided comparisons (#1148) (@ConnectedSystems)
• feat(sampling): graph-based conditional dependency resolution (#1149) (@ConnectedSystems)
• feat(sampling): stratified/matched/paired sampling for causal comparisons (#1150) (@ConnectedSystems)
• feat(decision): add projection_confidence factor and decision.build_decay (#1151) (@ConnectedSystems)
• feat(interventions): widen mc_min_iv_locations sampling range (#1152) (@ConnectedSystems)
• feat(metrics): add detrend option to temporal_variability (#1153) (@ConnectedSystems)
• feat(ADRIAanalysis): RSA auto-dispatch, stratified/counterfactual RSA, feature-set metadata (#1154) (@ConnectedSystems)
• feat(ADRIAviz): visualization support for stratified/CDF RSA comparisons (#1155) (@ConnectedSystems)
• fix(ci): bust poisoned julia-actions cache for ADRIAanalysis/ADRIAviz tests (#1157) (@ConnectedSystems)
• fix(ADRIAviz): correct _haversine_km unit/order bug and _nice_length range (#1158) (@ConnectedSystems)
• Add per-intervention revisit cadence for location deployment (#1159) (@ConnectedSystems)
• Scenario assessment features: RSA improvements, revisit cadence, DHW complexity, and perf work (#1132) (#1160) (@ConnectedSystems)
• chore(ADRIAviz): regenerate Manifest.toml for Flatten/Serialization deps and 0.2.0 pin (#1164) (@ConnectedSystems)
• Load calibrated coral parameters into ReefMod and RME domains (#1168) (@Zapiano)

Closed issues:

• TagBot trigger issue (#269)
• Outcome mapping could show full factor region (#1099)
• Wave scenario ID is not constant when no wave data is available (#1111)
• Further features to include or consider for scenario assessment (#1132)
• Fix broken @test expr || "message" pattern in test suite (#1136)
• CI: Julia stdlib precompile failures (MbedTLS_jll/LibGit2_jll) breaking test workflows (#1156)