v5.0.0

What's Changed

• TASK-7693-dev - Upgrade Ubuntu image on GitHub Actions by @juanfeSanahuja in #2587
• TASK-7772 - Upgrade java-driver and MongoDB versions by @pfurio in #2607
• Portpatch 4.1.2 -> 5.0.0-SNAPSHOT by @juanfeSanahuja in #2625
• TASK-8017 - An OpenCGA JUnit test causes a compilation failure by @jtarraga in #2632
• TASK-7809 - Support EMR version 7.5 by @j-coll in #2630
• TASK-7555 - Enable Opencga GRPC Server by @j-coll in #2629
• TASK-7972 - Pyopencga file upload method is not functional by @dapregi in #2628
• TASK-6217 - Solr improvements: Stats and Update by @j-coll in #2601
• TASK-8045 - Update SNAPSHOT policy in pom.xml by @juanfeSanahuja in #2634
• TASK-7922 - Fix: update JWT secret key for new environments by @pfurio in #2621
• TASK-7902 - Missing array of tags in Cohort data model by @pfurio in #2622
• TASK-7834 - OpenCGA start timeout with ~30 organizations -> k8s liveness and readiness probes fail by @pfurio in #2623
• TASK-7944 - Secondary Sample Index Annotation not executed/updated after file delete + index by @j-coll in #2627
• TASK-6346 - Load multiple VCFs with the same name by @j-coll in #2612
• TASK-7983 - Fix the clinical interpretation analysis tool by @jtarraga in #2633
• Implement SHA-256 checksum validation for file uploads by @Copilot in #2636
• TASK-7610 - Extend Workflows data model by @pfurio in #2631
• TASK-7442 - Implement different K8s pool types by @pfurio in #2611
• TASK-8093 - ToolParams not properly detected by @pfurio in #2638
• TASK-6771 - Error running variant-file-delete : IllegalArgumentException: Unknown status ERROR by @j-coll in #2637
• TASK-7645 - Integrated Clinical Preprocessing, Variant Assessment, and Reporting by @pfurio in #2624
• TASK-5564 - Update data sources for CellBase 6.x by @jtarraga in #2640
• TASK-8126 - OpenCGA migrations don't finish by @pfurio in #2639
• TASK-8138 - Xeta40 Integration tests failing by @pfurio in #2641
• TASK-8150 - JUnit tests: Investigate and fix errors by @j-coll in #2642
• TASK-8158 - GRPC doesn't stop streaming on cancelled requests. by @j-coll in #2643
• TASK-8139 - Fix the OpenCGA REST server to use the properly configured ObjectMapper from JacksonUtils by @jtarraga in #2644

New Contributors

• @Copilot made their first contribution in #2636

Full Changelog: v4.1.2...v5.0.0