chore(deps): update dependency snakemake to v9.25.1 by renovate[bot] · Pull Request #8635 · oxsecurity/megalinter

renovate · 2026-08-04T22:06:06Z

This PR contains the following updates:

Package	Change	Age	Confidence
snakemake	`9.24.0` → `9.25.1`

Release Notes

snakemake/snakemake (snakemake)

`v9.25.1`

Compare Source

Bug Fixes

fix f-string parsing at file end (#4269) (eab8d26)

Configuration

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github-actions · 2026-08-04T22:13:25Z

✅⚠️MegaLinter analysis: Success with warnings

⚠️ PYTHON / bandit - 138 errors

---------------------
>> Issue: [B311:blacklist] Standard pseudo-random generators are not suitable for security/cryptographic purposes.
   Severity: Low   Confidence: High
   CWE: CWE-330 (https://cwe.mitre.org/data/definitions/330.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/blacklists/blacklist_calls.html#b311-random
   Location: ./megalinter/utils_sarif.py:156:61
155	                        rule["id"] = (
156	                            rule["id"] + "_DUPLICATE_" + str(random.randint(1, 99999))
157	                        )

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:122:4
121	    )
122	    assert os.path.isdir(config.get(request_id, "DEFAULT_WORKSPACE")), (
123	        "DEFAULT_WORKSPACE "
124	        + config.get(request_id, "DEFAULT_WORKSPACE")
125	        + " is not a valid folder"
126	    )
127	

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:167:4
166	    tmp_report_folder = tempfile.gettempdir() + os.path.sep + str(uuid.uuid4())
167	    assert os.path.isdir(workspace), f"Test folder {workspace} is not existing"
168	    linter_name = linter.linter_name

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:241:4
240	    tmp_report_folder = tempfile.gettempdir() + os.path.sep + str(uuid.uuid4())
241	    assert os.path.isdir(workspace), f"Test folder {workspace} is not existing"
242	    if os.path.isfile(workspace + os.path.sep + "no_test_failure"):

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:490:4
489	    )
490	    assert os.path.isdir(workspace), f"Test folder {workspace} is not existing"
491	    expected_file_name = ""

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:590:4
589	        workspace += os.path.sep + "bad"
590	    assert os.path.isdir(workspace), f"Test folder {workspace} is not existing"
591	    # Call linter

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:683:4
682	        workspace = workspace + os.path.sep + "fix"
683	    assert os.path.isdir(workspace), f"Test folder {workspace} is not existing"
684	

--------------------------------------------------
>> Issue: [B101:assert_used] Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
   Severity: Low   Confidence: High
   CWE: CWE-703 (https://cwe.mitre.org/data/definitions/703.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b101_assert_used.html
   Location: ./megalinter/utilstest.py:789:12
788	            ]
789	            assert (len(list(diffs))) > 0, f"No changes in the {file} file"
790	

--------------------------------------------------
>> Issue: [B108:hardcoded_tmp_directory] Probable insecure usage of temp file/directory.
   Severity: Medium   Confidence: Medium
   CWE: CWE-377 (https://cwe.mitre.org/data/definitions/377.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b108_hardcoded_tmp_directory.html
   Location: ./server/server.py:81:42
80	    if item.fileUploadId:
81	        uploaded_file_path = os.path.join("/tmp/server-files", item.fileUploadId)
82	        if not os.path.isdir(uploaded_file_path):

--------------------------------------------------
>> Issue: [B108:hardcoded_tmp_directory] Probable insecure usage of temp file/directory.
   Severity: Medium   Confidence: Medium
   CWE: CWE-377 (https://cwe.mitre.org/data/definitions/377.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b108_hardcoded_tmp_directory.html
   Location: ./server/server.py:103:38
102	    file_upload_id = "FILE_" + str(uuid1())
103	    uploaded_file_path = os.path.join("/tmp/server-files", file_upload_id)
104	    os.makedirs(uploaded_file_path)

--------------------------------------------------
>> Issue: [B108:hardcoded_tmp_directory] Probable insecure usage of temp file/directory.
   Severity: Medium   Confidence: Medium
   CWE: CWE-377 (https://cwe.mitre.org/data/definitions/377.html)
   More Info: https://bandit.readthedocs.io/en/1.9.4/plugins/b108_hardcoded_tmp_directory.html
   Location: ./server/server_worker.py:98:34
97	        temp_dir = self.create_temp_dir()
98	        upload_dir = os.path.join("/tmp/server-files", file_upload_id)
99	        if os.path.exists(upload_dir):

--------------------------------------------------

Code scanned:
	Total lines of code: 21369
	Total lines skipped (#nosec): 0
	Total potential issues skipped due to specifically being disabled (e.g., #nosec BXXX): 0

Run metrics:
	Total issues (by severity):
		Undefined: 0
		Low: 106
		Medium: 23
		High: 9
	Total issues (by confidence):
		Undefined: 0
		Low: 13
		Medium: 22
		High: 103
Files skipped (0):

(Truncated to last 6666 characters out of 92961)

⚠️ BASH / bash-exec - 1 error

Results of bash-exec linter (version 5.3.9)
See documentation on https://megalinter.io/beta/descriptors/bash_bash_exec/
-----------------------------------------------

✅ [SUCCESS] .automation/build_schemas_doc.sh
✅ [SUCCESS] .automation/format-tables.sh
✅ [SUCCESS] .vscode/testlinter.sh
✅ [SUCCESS] build.sh
✅ [SUCCESS] entrypoint.sh
❌ [ERROR] sh/megalinter_exec.sh
    Error: File:[sh/megalinter_exec.sh] is not executable

✅ [SUCCESS] sh/setup-runtime-user.sh

⚠️ SPELL / lychee - 50 errors

38:17) | Rejected status code: 403 Forbidden
[403] https://cppcheck.sourceforge.io/ (at 39:18) | Rejected status code: 403 Forbidden
[403] https://cppcheck.sourceforge.io/manual.html#configuration (at 42:37) | Rejected status code: 403 Forbidden

Errors in megalinter/descriptors/html.megalinter-descriptor.yml
[404] https://htmlhint.com/_astro/htmlhint.DIRCoA_t_Z1czEXa.webp (at 85:23) | Rejected status code: 404 Not Found
[404] https://htmlhint.com/docs/user-guide/list-rules (at 84:23) | Rejected status code: 404 Not Found

Errors in megalinter/descriptors/java.megalinter-descriptor.yml
[403] https://pmd.sourceforge.io/pmd-6.55.0/pmd_userdocs_tools_ci.html (at 134:32) | Error (cached)

Errors in megalinter/descriptors/jsx.megalinter-descriptor.yml
[404] https://eslint-react.xyz/docs/getting-started/installation (at 82:37) | Error (cached)

Errors in megalinter/descriptors/kotlin.megalinter-descriptor.yml
[404] https://pinterest.github.io/ktlint/latest/api/custom-rule-set/ (at 67:15) | Rejected status code: 404 Not Found
[404] https://pinterest.github.io/ktlint/latest/faq/#how-do-i-suppress-errors-for-a-lineblockfile (at 38:38) | Rejected status code: 404 Not Found
[404] https://pinterest.github.io/ktlint/latest/rules/configuration-ktlint/ (at 37:37) | Rejected status code: 404 Not Found

Errors in megalinter/descriptors/kubernetes.megalinter-descriptor.yml
[404] https://raw.githubusercontent.com/datreeio/CRDs-catalog/main/%7B%7B.Group%7D%7D/%7B%7B.ResourceKind%7D%7D_%7B%7B.ResourceAPIVersion%7D%7D.json (at 69:22) | Rejected status code: 404 Not Found

Errors in megalinter/descriptors/markdown.megalinter-descriptor.yml
[403] https://www.npmjs.com/package/markdown-table-formatter (at 101:17) | Rejected status code: 403 Forbidden

Errors in megalinter/descriptors/repository.megalinter-descriptor.yml
[404] https://raw.githubusercontent.com/oxsecurity/megalinter/main/docs/assets/icons/linters/betterleaks.png (at 285:26) | Rejected status code: 404 Not Found

Errors in megalinter/descriptors/rst.megalinter-descriptor.yml
[403] https://docutils.sourceforge.io/docs/ref/rst/directives.html#raw-data-pass-through (at 34:38) | Rejected status code: 403 Forbidden

Errors in megalinter/descriptors/salesforce.megalinter-descriptor.yml
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/config.html (at 366:37) | Rejected status code: 403 Forbidden
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/engine-flow.html (at 363:17) | Rejected status code: 403 Forbidden
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/get-started.html (at 172:17) | Rejected status code: 403 Forbidden
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/get-started.html (at 270:17) | Error (cached)
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/get-started.html (at 72:17) | Rejected status code: 403 Forbidden
[403] https://developer.salesforce.com/docs/platform/salesforce-code-analyzer/guide/rules-flow.html (at 365:23) | Rejected status code: 403 Forbidden

Errors in megalinter/descriptors/spell.megalinter-descriptor.yml
[404] https://vale.sh/docs/topics/vocab/ (at 186:38) | Rejected status code: 404 Not Found | Followed 2 redirects. Redirects: https://vale.sh/docs/topics/vocab/ --[301]--> https://docs.vale.sh/topics/vocab/ --[302]--> https://docs.vale.sh/topics/vocab
[404] https://vale.sh/docs/vale-cli/structure/ (at 180:95) | Rejected status code: 404 Not Found | Followed 2 redirects. Redirects: https://vale.sh/docs/vale-cli/structure/ --[301]--> https://docs.vale.sh/vale-cli/structure/ --[302]--> https://docs.vale.sh/vale-cli/structure

Errors in megalinter/descriptors/tsx.megalinter-descriptor.yml
[404] https://eslint-react.xyz/docs/getting-started/installation (at 82:37) | Rejected status code: 404 Not Found

Errors in megalinter/descriptors/xml.megalinter-descriptor.yml
[406] https://gitlab.gnome.org/GNOME/libxml2/-/wikis/home (at 38:17) | Rejected status code: 406 Not Acceptable

Errors in README.md
[ERROR] https://ampcode.com/ (at 238:1) | HTTP/2 protocol error. Server may not support HTTP/2 properly
[301] https://future-architect.github.io/authors/%E5%AE%AE%E6%B0%B8%E5%B4%87%E5%8F%B2 (at 1944:104) | Rejected status code: 301 Moved Permanently
[TIMEOUT] https://generated.at/ (at 1298:301) | Request timed out
[404] https://github.com/oxsecurity/megalinter/stargazers (at 2076:3) | Rejected status code: 404 Not Found
[404] https://github.com/oxsecurity/megalinter/stargazers/ (at 23:1) | Rejected status code: 404 Not Found
[403] https://medium.com/@caodanju/30-seconds-to-setup-megalinter-your-go-to-tool-for-automated-code-quality-and-iac-security-969d90a5a99c (at 1912:3) | Rejected status code: 403 Forbidden
[403] https://medium.com/@RunningMattress (at 1921:255) | Rejected status code: 403 Forbidden
[403] https://medium.com/@RunningMattress/level-up-your-unity-packages-with-ci-cd-9498d2791211 (at 1921:3) | Rejected status code: 403 Forbidden
[403] https://medium.com/@SeasonedDeveloper (at 1908:255) | Rejected status code: 403 Forbidden
[403] https://medium.com/@SeasonedDeveloper/looking-for-the-best-ci-cd-pipeline-linting-tool-try-megalinter-d89c9eba850d (at 1908:3) | Rejected status code: 403 Forbidden
[403] https://medium.com/datamindedbe/integrating-megalinter-to-automate-linting-across-multiple-codebases-a-technical-description-a200bb235b71 (at 1909:3) | Rejected status code: 403 Forbidden
[403] https://npmjs.org/package/mega-linter-runner (at 1213:1) | Error (cached)
[403] https://npmjs.org/package/mega-linter-runner (at 1214:1) | Error (cached)
[403] https://npmjs.org/package/mega-linter-runner (at 1215:1) | Error (cached)
[403] https://npmjs.org/package/mega-linter-runner (at 21:1) | Rejected status code: 403 Forbidden | Followed 1 redirect. Redirects: https://npmjs.org/package/mega-linter-runner --[301]--> https://www.npmjs.com/package/mega-linter-runner
[403] https://openai.com/codex/ (at 230:1) | Rejected status code: 403 Forbidden
[403] https://pmd.sourceforge.io/pmd-6.55.0/pmd_userdocs_tools_ci.html (at 2008:3) | Rejected status code: 403 Forbidden
[403] https://www.npmjs.com/package/@downatthebottomofthemolehole/megalinter-mcp-server (at 1886:354) | Rejected status code: 403 Forbidden

Hint: Followed 734 redirects. You might want to consider replacing redirecting URLs with the resolved URLs. Use verbose mode (`-v`/`-vv`) to see redirection details.
Hint: Rejected redirectional status codes. This means some redirects were not followed. You might want to increase the limit for `-m`/`--max-redirects`.

(Truncated to last 6666 characters out of 29274)

⚠️ MARKDOWN / markdownlint - 338 errors

uld have alternate text (alt text)
docs/reporters/ApiReporter.md:335:1 error MD045/no-alt-text Images should have alternate text (alt text)
docs/reporters/ApiReporter.md:343:1 error MD045/no-alt-text Images should have alternate text (alt text)
docs/reporters/ApiReporter.md:349:1 error MD045/no-alt-text Images should have alternate text (alt text)
docs/reporters/ApiReporter.md:359:1 error MD045/no-alt-text Images should have alternate text (alt text)
docs/reporters/ApiReporter.md:365:1 error MD045/no-alt-text Images should have alternate text (alt text)
docs/reporters/AzureCommentReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Azure Comment Reporter"]
docs/reporters/BitbucketCommentReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Bitbucket Comment Reporter"]
docs/reporters/ConfigReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "IDE Configuration Reporter"]
docs/reporters/ConsoleReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Console Reporter"]
docs/reporters/EmailReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "E-mail Reporter"]
docs/reporters/FileIoReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "File.io Reporter"]
docs/reporters/GitHubCommentReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "GitHub Comment Reporter"]
docs/reporters/GitHubCommentReporter.md:27:196 error MD056/table-column-count Table column count [Expected: 4; Actual: 3; Too few cells, row will be missing data]
docs/reporters/GitHubCommentReporter.md:27:46 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:27:174 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:27:196 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:28:179 error MD056/table-column-count Table column count [Expected: 4; Actual: 3; Too few cells, row will be missing data]
docs/reporters/GitHubCommentReporter.md:28:46 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:28:160 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:28:179 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:29:159 error MD056/table-column-count Table column count [Expected: 4; Actual: 3; Too few cells, row will be missing data]
docs/reporters/GitHubCommentReporter.md:29:48 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:29:143 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:29:159 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:30:171 error MD056/table-column-count Table column count [Expected: 4; Actual: 3; Too few cells, row will be missing data]
docs/reporters/GitHubCommentReporter.md:30:46 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:30:152 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubCommentReporter.md:30:171 error MD060/table-column-style Table column style [Table pipe does not align with header for style "aligned"]
docs/reporters/GitHubStatusReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "GitHub Status Reporter"]
docs/reporters/GitlabCommentReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Gitlab Comment Reporter"]
docs/reporters/JsonReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "JSON Reporter"]
docs/reporters/MarkdownSummaryReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Markdown Summary Reporter"]
docs/reporters/SarifReporter.md:6 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "SARIF Reporter (beta)"]
docs/reporters/TapReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "TAP Reporter"]
docs/reporters/TextReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Text Reporter"]
docs/reporters/UpdatedSourcesReporter.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Updated Sources Reporter"]
docs/special-thanks.md:9 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Special thanks"]
docs/special-thanks.md:23:3 error MD045/no-alt-text Images should have alternate text (alt text)
docs/sponsor.md:5 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Sponsoring"]
docs/supported-linters.md:9 error MD025/single-title/single-h1 Multiple top-level headings in the same document [Context: "Supported Linters"]
mega-linter-runner/generators/mega-linter-custom-flavor/templates/README.md:69 error MD024/no-duplicate-heading Multiple headings with the same content [Context: "How to use the custom flavor"]
mega-linter-runner/README.md:27:274 error MD051/link-fragments Link fragments should be valid [Context: "[**apply formatting and auto-fixes**](#apply-fixes)"]
mega-linter-runner/README.md:27:217 error MD051/link-fragments Link fragments should be valid [Context: "[**reports in several formats**](#reports)"]
README.md:210:127 error MD051/link-fragments Link fragments should be valid [Context: "[many additional features](#mega-linter-vs-super-linter)"]
README.md:2103:3 error MD045/no-alt-text Images should have alternate text (alt text)

(Truncated to last 6666 characters out of 44718)

⚠️ YAML / prettier - 14 errors

ml 2ms (unchanged)
.github/linters/valestyles/proselint/P-Value.yml 1ms (unchanged)
.github/linters/valestyles/proselint/RASSyndrome.yml 2ms (unchanged)
.github/linters/valestyles/proselint/Skunked.yml 2ms (unchanged)
.github/linters/valestyles/proselint/Spelling.yml 3ms (unchanged)
.github/linters/valestyles/proselint/Typography.yml 3ms (unchanged)
.github/linters/valestyles/proselint/Uncomparables.yml 4ms (unchanged)
.github/linters/valestyles/proselint/Very.yml 1ms (unchanged)
.github/release-drafter.yml 8ms (unchanged)
.grype.yaml 5ms (unchanged)
.mega-linter.yml 12ms (unchanged)
.pre-commit-hooks.yaml 6ms (unchanged)
action.yml 3ms (unchanged)
codecov.yml 2ms (unchanged)
mega-linter-runner/.eslintrc.yml 3ms (unchanged)
mega-linter-runner/.mega-linter.yml 4ms (unchanged)
mega-linter-runner/generators/mega-linter-custom-flavor/templates/action.yml 4ms (unchanged)
mega-linter-runner/generators/mega-linter-custom-flavor/templates/check-new-megalinter-version.yml 18ms (unchanged)
mega-linter-runner/generators/mega-linter-custom-flavor/templates/megalinter-custom-flavor-builder.yml 11ms (unchanged)
[error] mega-linter-runner/generators/mega-linter-custom-flavor/templates/megalinter-custom-flavor.yml: SyntaxError: Implicit map keys need to be followed by map values (6:1)
[error]   4 | label: <%= CUSTOM_FLAVOR_LABEL %>
[error]   5 | linters:
[error] > 6 | <%= CUSTOM_FLAVOR_LINTERS %>
[error]     | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[error]   7 |
mega-linter-runner/generators/mega-linter/templates/.drone.yml 3ms (unchanged)
mega-linter-runner/generators/mega-linter/templates/.gitlab-ci.yml 5ms (unchanged)
mega-linter-runner/generators/mega-linter/templates/azure-pipelines.yml 5ms (unchanged)
mega-linter-runner/generators/mega-linter/templates/bitbucket-pipelines.yml 7ms (unchanged)
mega-linter-runner/generators/mega-linter/templates/concourse-task.yml 4ms (unchanged)
[error] mega-linter-runner/generators/mega-linter/templates/mega-linter.yml: SyntaxError: Implicit map keys need to be followed by map values (67:11)
[error]   65 |           # Only define `secrets.PAT` if you fully understand the trade-off.
[error]   66 |           token: ${{ secrets.PAT || secrets.GITHUB_TOKEN }}
[error] > 67 |           <%- PERSIST_CREDENTIALS %>
[error]      |           ^^^^^^^^^^^^^^^^^^^^^^^^^^
[error]   68 |
[error]   69 |           # If you use VALIDATE_ALL_CODEBASE = true, you can remove this line to
[error]   70 |           # improve performance
megalinter/descriptors/action.megalinter-descriptor.yml 15ms (unchanged)
megalinter/descriptors/ansible.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/arm.megalinter-descriptor.yml 6ms (unchanged)
megalinter/descriptors/bash.megalinter-descriptor.yml 23ms (unchanged)
megalinter/descriptors/bicep.megalinter-descriptor.yml 6ms (unchanged)
megalinter/descriptors/c.megalinter-descriptor.yml 15ms (unchanged)
megalinter/descriptors/clojure.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/cloudformation.megalinter-descriptor.yml 11ms (unchanged)
megalinter/descriptors/coffee.megalinter-descriptor.yml 6ms (unchanged)
megalinter/descriptors/copypaste.megalinter-descriptor.yml 4ms (unchanged)
megalinter/descriptors/cpp.megalinter-descriptor.yml 12ms (unchanged)
megalinter/descriptors/csharp.megalinter-descriptor.yml 12ms (unchanged)
megalinter/descriptors/css.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/dart.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/dockerfile.megalinter-descriptor.yml 8ms (unchanged)
megalinter/descriptors/editorconfig.megalinter-descriptor.yml 4ms (unchanged)
megalinter/descriptors/env.megalinter-descriptor.yml 4ms (unchanged)
megalinter/descriptors/gherkin.megalinter-descriptor.yml 8ms (unchanged)
megalinter/descriptors/go.megalinter-descriptor.yml 10ms (unchanged)
megalinter/descriptors/graphql.megalinter-descriptor.yml 4ms (unchanged)
megalinter/descriptors/groovy.megalinter-descriptor.yml 8ms (unchanged)
megalinter/descriptors/html.megalinter-descriptor.yml 8ms (unchanged)
megalinter/descriptors/java.megalinter-descriptor.yml 12ms (unchanged)
megalinter/descriptors/javascript.megalinter-descriptor.yml 17ms (unchanged)
megalinter/descriptors/json.megalinter-descriptor.yml 13ms (unchanged)
megalinter/descriptors/jsx.megalinter-descriptor.yml 11ms (unchanged)
megalinter/descriptors/kotlin.megalinter-descriptor.yml 11ms (unchanged)
megalinter/descriptors/kubernetes.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/latex.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/lua.megalinter-descriptor.yml 6ms (unchanged)
megalinter/descriptors/markdown.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/perl.megalinter-descriptor.yml 5ms (unchanged)
megalinter/descriptors/php.megalinter-descriptor.yml 23ms (unchanged)
megalinter/descriptors/powershell.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/protobuf.megalinter-descriptor.yml 3ms (unchanged)
megalinter/descriptors/python.megalinter-descriptor.yml 52ms (unchanged)
megalinter/descriptors/r.megalinter-descriptor.yml 3ms (unchanged)
megalinter/descriptors/raku.megalinter-descriptor.yml 4ms (unchanged)
megalinter/descriptors/repository.megalinter-descriptor.yml 98ms (unchanged)
megalinter/descriptors/robotframework.megalinter-descriptor.yml 3ms (unchanged)
megalinter/descriptors/rst.megalinter-descriptor.yml 10ms (unchanged)
megalinter/descriptors/ruby.megalinter-descriptor.yml 9ms (unchanged)
megalinter/descriptors/rust.megalinter-descriptor.yml 6ms (unchanged)
megalinter/descriptors/salesforce.megalinter-descriptor.yml 24ms (unchanged)
megalinter/descriptors/scala.megalinter-descriptor.yml 5ms (unchanged)
megalinter/descriptors/snakemake.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/spell.megalinter-descriptor.yml 23ms (unchanged)
megalinter/descriptors/sql.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/swift.megalinter-descriptor.yml 5ms (unchanged)
megalinter/descriptors/tekton.megalinter-descriptor.yml 3ms (unchanged)
megalinter/descriptors/terraform.megalinter-descriptor.yml 11ms (unchanged)
megalinter/descriptors/tsx.megalinter-descriptor.yml 8ms (unchanged)
megalinter/descriptors/typescript.megalinter-descriptor.yml 17ms (unchanged)
megalinter/descriptors/vbdotnet.megalinter-descriptor.yml 7ms (unchanged)
megalinter/descriptors/xml.megalinter-descriptor.yml 3ms (unchanged)
megalinter/descriptors/yaml.megalinter-descriptor.yml 9ms (unchanged)
server/docker-compose-dev.yml 5ms (unchanged)
server/docker-compose.yml 3ms (unchanged)
trivy-secret.yaml 1ms (unchanged)
zizmor.yml 4ms (unchanged)

(Truncated to last 6666 characters out of 11776)

⚠️ YAML / yamllint - 34 errors

.grype.yaml
  6:1       warning  missing document start "---"  (document-start)

mega-linter-runner/.eslintrc.yml
  11:9      warning  too few spaces inside empty braces  (braces)

mega-linter-runner/generators/mega-linter-custom-flavor/templates/megalinter-custom-flavor-builder.yml
  48:15     warning  too few spaces inside empty braces  (braces)

mega-linter-runner/generators/mega-linter-custom-flavor/templates/megalinter-custom-flavor.yml
  7:1       error    syntax error: could not find expected ':' (syntax)

mega-linter-runner/generators/mega-linter/templates/mega-linter.yml
  38:15     warning  too few spaces inside empty braces  (braces)
  69:11     error    syntax error: could not find expected ':' (syntax)

megalinter/descriptors/copypaste.megalinter-descriptor.yml
  18:301    warning  line too long (313 > 300 characters)  (line-length)

megalinter/descriptors/javascript.megalinter-descriptor.yml
  54:301    warning  line too long (475 > 300 characters)  (line-length)
  348:301   warning  line too long (307 > 300 characters)  (line-length)

megalinter/descriptors/jsx.megalinter-descriptor.yml
  30:301    warning  line too long (475 > 300 characters)  (line-length)

megalinter/descriptors/perl.megalinter-descriptor.yml
  25:301    warning  line too long (310 > 300 characters)  (line-length)

megalinter/descriptors/php.megalinter-descriptor.yml
  195:301   warning  line too long (389 > 300 characters)  (line-length)
  209:301   warning  line too long (302 > 300 characters)  (line-length)

megalinter/descriptors/repository.megalinter-descriptor.yml
  183:301   warning  line too long (408 > 300 characters)  (line-length)
  287:301   warning  line too long (345 > 300 characters)  (line-length)
  461:301   warning  line too long (306 > 300 characters)  (line-length)
  624:301   warning  line too long (316 > 300 characters)  (line-length)
  949:301   warning  line too long (1263 > 300 characters)  (line-length)
  1042:301  warning  line too long (879 > 300 characters)  (line-length)
  1056:301  warning  line too long (358 > 300 characters)  (line-length)
  1118:301  warning  line too long (346 > 300 characters)  (line-length)
  1125:301  warning  line too long (307 > 300 characters)  (line-length)

megalinter/descriptors/salesforce.megalinter-descriptor.yml
  52:301    warning  line too long (359 > 300 characters)  (line-length)

megalinter/descriptors/spell.megalinter-descriptor.yml
  178:301   warning  line too long (315 > 300 characters)  (line-length)

megalinter/descriptors/terraform.megalinter-descriptor.yml
  27:301    warning  line too long (330 > 300 characters)  (line-length)
  87:301    warning  line too long (346 > 300 characters)  (line-length)
  153:301   warning  line too long (328 > 300 characters)  (line-length)

megalinter/descriptors/tsx.megalinter-descriptor.yml
  30:301    warning  line too long (475 > 300 characters)  (line-length)

megalinter/descriptors/typescript.megalinter-descriptor.yml
  41:301    warning  line too long (475 > 300 characters)  (line-length)
  338:301   warning  line too long (314 > 300 characters)  (line-length)

mkdocs.yml
  8:301     warning  line too long (590 > 300 characters)  (line-length)
  72:5      warning  wrong indentation: expected 6 but found 4  (indentation)
  85:5      warning  wrong indentation: expected 6 but found 4  (indentation)

zizmor.yml
  1:1       warning  missing document start "---"  (document-start)

✅ Linters with no issues

actionlint, betterleaks, black, checkov, cspell, flake8, git_diff, grype, hadolint, isort, jscpd, jsonlint, markdown-table-formatter, mypy, npm-groovy-lint, osv-scanner, pylint, ruff, secretlint, shellcheck, shfmt, syft, trivy, trivy-sbom, trufflehog, v8r, v8r, xmllint, zizmor

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⚠️ Your configuration references items that have been removed from MegaLinter and are ignored: API. See Removed linters to find their replacements.

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renovate Bot added the dependencies Pull requests that update a dependency file label Aug 4, 2026

renovate Bot requested review from Kurt-von-Laven, bdovaz, echoix and nvuillam as code owners August 4, 2026 22:06

renovate Bot added the dependencies Pull requests that update a dependency file label Aug 4, 2026

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renovate Bot force-pushed the renovate/snakemake-9.x branch from bd7abc4 to 1fbfce7 Compare August 5, 2026 07:56

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chore(deps): update dependency snakemake to v9.25.1

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renovate Bot force-pushed the renovate/snakemake-9.x branch from 1fbfce7 to 2bcfc8f Compare August 5, 2026 08:18

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chore(deps): update dependency snakemake to v9.25.1 - #8635

chore(deps): update dependency snakemake to v9.25.1#8635
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v9.25.1

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renovate Bot commented Aug 4, 2026 •

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`v9.25.1`

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